1F30 - JenaLib

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   THE STRUCTURAL BASIS FOR DNA PROTECTION BY E. COLI DPS PROTEIN

Authors :   J. Luo, D. Liu, M. A. White, R. O. Fox

Date :   31 May 00 (Deposition) - 17 Jun 03 (Release) - 18 Apr 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.85

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F  (2x)
Biol. Unit 2: G,H,I,J,K,L  (2x)

Keywords :   Dodecamer, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Luo, D. Liu, M. A. White, R. O. Fox
The Structural Basis For Dna Protection By E. Coli Dps Protein
To Be Published
PubMed: search

Molecule 1 - DNA PROTECTION DURING STARVATION PROTEIN
	Chains	:	A, B, C, D, E, F, G, H, I, J, K, L
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET32A
	Expression System Strain	:	BL21(DE3)PLYSS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	DPS
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Synonym	:	DPS

		1	2	3	4	5	6	7	8	9	10	11	12
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I	J	K	L
Biological Unit 1 (2x)	:	A	B	C	D	E	F
Biological Unit 2 (2x)	:							G	H	I	J	K	L

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 24)

No.	Name	Count	Type	Full Name
1	TRS	12	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2	ZN	12	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 12)

No.	Name	Count	Type	Full Name
1	TRS	12	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (1, 12)

No.	Name	Count	Type	Full Name
1	TRS	12	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (24, 24)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:51 , HOH A:614 , ASP B:78 , GLU B:82	BINDING SITE FOR RESIDUE ZN B 201
02	AC2	SOFTWARE	ASP A:78 , GLU A:82 , HIS B:51 , HOH B:242 , HOH B:247	BINDING SITE FOR RESIDUE ZN A 201
03	AC3	SOFTWARE	HIS C:51 , ASP C:78 , GLU C:82 , HOH C:645 , HOH C:651	BINDING SITE FOR RESIDUE ZN C 201
04	AC4	SOFTWARE	HIS D:51 , HIS D:63 , ASP D:78 , GLU D:82 , HOH D:454 , HOH D:458	BINDING SITE FOR RESIDUE ZN D 201
05	AC5	SOFTWARE	HIS E:51 , HOH E:657 , ASP F:78 , GLU F:82	BINDING SITE FOR RESIDUE ZN F 201
06	AC6	SOFTWARE	ASP E:78 , GLU E:82 , HIS F:51 , HOH F:257	BINDING SITE FOR RESIDUE ZN E 201
07	AC7	SOFTWARE	HIS G:51 , ASP H:78 , GLU H:82	BINDING SITE FOR RESIDUE ZN H 201
08	AC8	SOFTWARE	ASP G:78 , GLU G:82 , HIS H:51 , HIS H:63 , HOH H:210	BINDING SITE FOR RESIDUE ZN G 201
09	AC9	SOFTWARE	HIS I:51 , HOH I:608 , HOH I:611 , ASP J:78 , GLU J:82	BINDING SITE FOR RESIDUE ZN J 201
10	BC1	SOFTWARE	ASP I:78 , GLU I:82 , HIS J:51 , HOH J:622 , HOH J:624	BINDING SITE FOR RESIDUE ZN I 201
11	BC2	SOFTWARE	HIS K:51 , ASP K:78 , GLU K:82 , HOH K:611 , HOH K:613	BINDING SITE FOR RESIDUE ZN K 201
12	BC3	SOFTWARE	HOH H:205 , HIS L:51 , ASP L:78 , GLU L:82	BINDING SITE FOR RESIDUE ZN L 201
13	BC4	SOFTWARE	ALA A:57 , GLU A:167 , HOH A:655 , ALA D:57 , GLU D:167 , ALA E:57 , GLU E:167	BINDING SITE FOR RESIDUE TRS A 601
14	BC5	SOFTWARE	GLU A:64 , GLU D:64 , HOH D:414 , GLU E:64 , HOH E:659 , HOH E:663	BINDING SITE FOR RESIDUE TRS A 602
15	BC6	SOFTWARE	ASP B:146 , ASP C:146 , ASP E:146	BINDING SITE FOR RESIDUE TRS E 603
16	BC7	SOFTWARE	GLU B:64 , HOH B:217 , GLU C:64 , HOH C:669 , HOH C:672 , GLU F:64	BINDING SITE FOR RESIDUE TRS C 604
17	BC8	SOFTWARE	GLU B:167 , GLU C:167 , ALA F:57 , GLU F:167 , HOH F:168 , HOH F:173	BINDING SITE FOR RESIDUE TRS F 605
18	BC9	SOFTWARE	ASP A:146 , HOH A:641 , ASP D:146 , ASP F:146	BINDING SITE FOR RESIDUE TRS D 606
19	CC1	SOFTWARE	ASP G:146 , ASP I:146 , ASP K:146	BINDING SITE FOR RESIDUE TRS I 607
20	CC2	SOFTWARE	GLU H:167 , ALA I:57 , GLU I:167 , ALA L:57 , GLU L:167	BINDING SITE FOR RESIDUE TRS L 608
21	CC3	SOFTWARE	GLU I:64 , GLU L:64	BINDING SITE FOR RESIDUE TRS L 609
22	CC4	SOFTWARE	GLU G:64 , HOH J:616 , GLU K:64	BINDING SITE FOR RESIDUE TRS K 610
23	CC5	SOFTWARE	ALA G:57 , GLU G:167 , ALA J:57 , GLU J:167 , GLU K:167	BINDING SITE FOR RESIDUE TRS J 611
24	CC6	SOFTWARE	ASP H:146 , ALA H:150 , ASP J:146 , ASP L:146	BINDING SITE FOR RESIDUE TRS J 612

(no "SS Bond" information available for 1F30)

(no "Cis Peptide Bond" information available for 1F30)

(no "SAP(SNP)/Variant" information available for 1F30)

Asymmetric Unit (2, 24)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DPS_1	PS00818	Dps protein family signature 1.	DPS_ECOLI	51-67	12	A:51-67 B:51-67 C:51-67 D:51-67 E:51-67 F:51-67 G:51-67 H:51-67 I:51-67 J:51-67 K:51-67 L:51-67
2	DPS_2	PS00819	Dps protein family signature 2.	DPS_ECOLI	77-91	12	A:77-91 B:77-91 C:77-91 D:77-91 E:77-91 F:77-91 G:77-91 H:77-91 I:77-91 J:77-91 K:77-91 L:77-91

Biological Unit 1 (2, 24)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DPS_1	PS00818	Dps protein family signature 1.	DPS_ECOLI	51-67	12	A:51-67 B:51-67 C:51-67 D:51-67 E:51-67 F:51-67 - - - - - -
2	DPS_2	PS00819	Dps protein family signature 2.	DPS_ECOLI	77-91	12	A:77-91 B:77-91 C:77-91 D:77-91 E:77-91 F:77-91 - - - - - -

Biological Unit 2 (2, 24)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DPS_1	PS00818	Dps protein family signature 1.	DPS_ECOLI	51-67	12	- - - - - - G:51-67 H:51-67 I:51-67 J:51-67 K:51-67 L:51-67
2	DPS_2	PS00819	Dps protein family signature 2.	DPS_ECOLI	77-91	12	- - - - - - G:77-91 H:77-91 I:77-91 J:77-91 K:77-91 L:77-91

(no "Exon" information available for 1F30)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:156
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:156
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
            DPS_ECOLI    12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1f30a_ A: Dodecameric ferritin homolog                                                                                                                      SCOP domains
               CATH domains 1f30A00 A:12-167  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1f30 A  12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161

Chain B from PDB  Type:PROTEIN  Length:156
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:156
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
            DPS_ECOLI    12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1f30b_ B: Dodecameric ferritin homolog                                                                                                                      SCOP domains
               CATH domains 1f30B00 B:12-167  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1f30 B  12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161

Chain C from PDB  Type:PROTEIN  Length:156
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:156
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
            DPS_ECOLI    12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1f30c_ C: Dodecameric ferritin homolog                                                                                                                      SCOP domains
               CATH domains 1f30C00 C:12-167  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1f30 C  12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161

Chain D from PDB  Type:PROTEIN  Length:156
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:156
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
            DPS_ECOLI    12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1f30d_ D: Dodecameric ferritin homolog                                                                                                                      SCOP domains
               CATH domains 1f30D00 D:12-167  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1f30 D  12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161

Chain E from PDB  Type:PROTEIN  Length:156
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:156
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
            DPS_ECOLI    12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1f30e_ E: Dodecameric ferritin homolog                                                                                                                      SCOP domains
               CATH domains 1f30E00 E:12-167  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1f30 E  12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161

Chain F from PDB  Type:PROTEIN  Length:156
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:156
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
            DPS_ECOLI    12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1f30f_ F: Dodecameric ferritin homolog                                                                                                                      SCOP domains
               CATH domains 1f30F00 F:12-167  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1f30 F  12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161

Chain G from PDB  Type:PROTEIN  Length:156
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:156
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
            DPS_ECOLI    12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1f30g_ G: Dodecameric ferritin homolog                                                                                                                      SCOP domains
               CATH domains 1f30G00 G:12-167  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1f30 G  12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161

Chain H from PDB  Type:PROTEIN  Length:156
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:156
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
            DPS_ECOLI    12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1f30h_ H: Dodecameric ferritin homolog                                                                                                                      SCOP domains
               CATH domains 1f30H00 H:12-167  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1f30 H  12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161

Chain I from PDB  Type:PROTEIN  Length:156
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:156
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
            DPS_ECOLI    12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1f30i_ I: Dodecameric ferritin homolog                                                                                                                      SCOP domains
               CATH domains 1f30I00 I:12-167  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1f30 I  12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161

Chain J from PDB  Type:PROTEIN  Length:156
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:156
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
            DPS_ECOLI    12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1f30j_ J: Dodecameric ferritin homolog                                                                                                                      SCOP domains
               CATH domains 1f30J00 J:12-167  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1f30 J  12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161

Chain K from PDB  Type:PROTEIN  Length:156
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:156
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
            DPS_ECOLI    12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1f30k_ K: Dodecameric ferritin homolog                                                                                                                      SCOP domains
               CATH domains 1f30K00 K:12-167  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1f30 K  12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161

Chain L from PDB  Type:PROTEIN  Length:156
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:156
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
            DPS_ECOLI    12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1f30l_ L: Dodecameric ferritin homolog                                                                                                                      SCOP domains
               CATH domains 1f30L00 L:12-167  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1f30 L  12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Ferritin-like (533)

Superfamily: Ferritin-like (489)

Family: Ferritin (232)

Protein domain: Dodecameric ferritin homolog (44)

Escherichia coli, Dps [TaxId: 562] (7)

1a	d1f30a_	A:
1b	d1f30b_	B:
1c	d1f30c_	C:
1d	d1f30d_	D:
1e	d1f30e_	E:
1f	d1f30f_	F:
1g	d1f30g_	G:
1h	d1f30h_	H:
1i	d1f30i_	I:
1j	d1f30j_	J:
1k	d1f30k_	K:
1l	d1f30l_	L:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Up-down Bundle (3216)

Topology: Ferritin; (180)

Homologous Superfamily: [code=1.20.1260.10, no name defined] (180)

Escherichia coli. Organism_taxid: 562. (3)

1a	1f30A00	A:12-167
1b	1f30B00	B:12-167
1c	1f30C00	C:12-167
1d	1f30D00	D:12-167
1e	1f30E00	E:12-167
1f	1f30F00	F:12-167
1g	1f30G00	G:12-167
1h	1f30H00	H:12-167
1i	1f30I00	I:12-167
1j	1f30J00	J:12-167
1k	1f30K00	K:12-167
1l	1f30L00	L:12-167

(no "Pfam Domain" information available for 1F30)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H,I,J,K,L (DPS_ECOLI | P0ABT2)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0008199	ferric iron binding	Interacting selectively and non-covalently with ferric iron, Fe(III).
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016722	oxidoreductase activity, oxidizing metal ions	Catalysis of an oxidation-reduction in which the oxidation state of metal ion is altered.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0006879	cellular iron ion homeostasis	Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
	GO:0030261	chromosome condensation	The progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division, or during apoptosis, in eukaryotic cells.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0042594	response to starvation	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment.
	GO:0006950	response to stress	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0009295	nucleoid	The region of a virus, bacterial cell, mitochondrion or chloroplast to which the nucleic acid is confined.

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1f30)

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	1f30
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	DPS_ECOLI \| P0ABT2	:	1dps 1f33 1jre 1jts 1l8h 1l8i 2w9r 3o2h

1dps	1DPS CONTAINS THE STRUCTURE OF APO DPS IN A DIFFERENT SPACE GROUP
1f33	1F33 CONTAINS THE SAME PROTEIN WITHOUT ZINC

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 24)

Sites (24, 24)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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SCOP Domains (1, 12)

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