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Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   DNA PROTECTION AND BINDING BY E. COLI DPS PROTEIN

Authors :   J. Luo, D. Liu, M. A. White, R. O. Fox

Date :   13 Aug 01 (Deposition) - 17 Jun 03 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.65

Chains :   Asym./Biol. Unit : A,B,C,D,E,F,G,H,I,J,K,L

Keywords :   Dodecamer, Metal Bound Complex, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Luo, D. Liu, M. A. White, R. O. Fox
Dna Protection And Binding By E. Coli Dps Protein
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - DNA PROTECTION DURING STARVATION PROTEIN
	Chains	:	A, B, C, D, E, F, G, H, I, J, K, L
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Mutation	:	YES
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562

		1	2	3	4	5	6	7	8	9	10	11	12
Asymmetric/Biological Unit	:	A	B	C	D	E	F	G	H	I	J	K	L

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 25)

No.	Name	Count	Type	Full Name
1	CD	13	Ligand/Ion	CADMIUM ION
2	TRS	12	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Asymmetric Unit (25, 25)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:51 , ASP A:67 , HOH A:557 , HOH A:568 , HOH A:570 , GLU B:82	BINDING SITE FOR RESIDUE CD B 201
02	AC2	SOFTWARE	GLU A:82 , HOH A:590 , HOH A:603 , HIS B:51 , ASP B:67 , HOH B:575	BINDING SITE FOR RESIDUE CD A 201
03	AC3	SOFTWARE	HIS C:51 , ASP C:67 , HOH C:662 , GLU D:82 , HOH D:651	BINDING SITE FOR RESIDUE CD D 201
04	AC4	SOFTWARE	GLU C:82 , HOH C:681 , HOH C:693 , HIS D:51 , ASP D:67	BINDING SITE FOR RESIDUE CD C 201
05	AC5	SOFTWARE	HIS E:51 , ASP E:67 , HOH E:612 , HOH E:628 , GLU F:82 , HOH F:624	BINDING SITE FOR RESIDUE CD F 201
06	AC6	SOFTWARE	GLU E:82 , HIS F:51 , ASP F:67 , HOH F:683 , HOH F:694	BINDING SITE FOR RESIDUE CD E 201
07	AC7	SOFTWARE	HIS G:51 , HOH G:559 , HOH G:565 , GLU H:82	BINDING SITE FOR RESIDUE CD H 201
08	AC8	SOFTWARE	GLU G:120 , HOH G:573 , HOH G:585	BINDING SITE FOR RESIDUE CD G 202
09	AC9	SOFTWARE	GLU G:82 , HOH G:642 , HIS H:51 , ASP H:67 , HOH H:631 , HOH H:643	BINDING SITE FOR RESIDUE CD G 201
10	BC1	SOFTWARE	HIS I:51 , ASP I:67 , HOH I:697 , HOH I:699 , HOH I:701 , GLU J:82	BINDING SITE FOR RESIDUE CD J 201
11	BC2	SOFTWARE	GLU I:82 , HOH I:677 , HIS J:51 , ASP J:67 , HOH J:660 , HOH J:670	BINDING SITE FOR RESIDUE CD I 201
12	BC3	SOFTWARE	HIS K:51 , ASP K:67 , HOH K:564 , HOH K:586 , GLU L:82 , HOH L:583	BINDING SITE FOR RESIDUE CD L 201
13	BC4	SOFTWARE	GLU K:82 , HIS L:51 , ASP L:67 , HOH L:526 , HOH L:531 , HOH L:540	BINDING SITE FOR RESIDUE CD K 201
14	BC5	SOFTWARE	ASP A:146 , ASP E:146 , ASP I:146	BINDING SITE FOR RESIDUE TRS A 301
15	BC6	SOFTWARE	GLU C:64 , GLU G:64 , GLU K:64 , HOH K:623	BINDING SITE FOR RESIDUE TRS K 302
16	BC7	SOFTWARE	GLU C:167 , GLU G:167 , ALA K:57 , GLU K:167	BINDING SITE FOR RESIDUE TRS C 303
17	BC8	SOFTWARE	ASP B:146 , ASP H:146 , ASP K:146	BINDING SITE FOR RESIDUE TRS B 304
18	BC9	SOFTWARE	GLU D:64 , GLU I:64	BINDING SITE FOR RESIDUE TRS D 305
19	CC1	SOFTWARE	ALA D:57 , GLU D:167 , ALA F:57 , GLU F:167 , ALA I:57 , GLU I:167	BINDING SITE FOR RESIDUE TRS D 306
20	CC2	SOFTWARE	ASP C:146 , ASP F:146 , ASP L:146	BINDING SITE FOR RESIDUE TRS C 307
21	CC3	SOFTWARE	GLU A:64 , GLU H:64 , HOH H:621 , GLU J:64	BINDING SITE FOR RESIDUE TRS H 308
22	CC4	SOFTWARE	GLU A:167 , GLU H:167 , ALA J:57 , GLU J:167	BINDING SITE FOR RESIDUE TRS A 309
23	CC5	SOFTWARE	ASP D:146 , ASP G:146 , ASP J:146	BINDING SITE FOR RESIDUE TRS D 310
24	CC6	SOFTWARE	HOH B:560 , GLU E:64 , GLU L:64	BINDING SITE FOR RESIDUE TRS E 311
25	CC7	SOFTWARE	GLU B:167 , HOH B:518 , GLU E:167 , HOH E:521 , GLU L:167	BINDING SITE FOR RESIDUE TRS B 312

(no "SS Bond" information available for 1JRE)

(no "Cis Peptide Bond" information available for 1JRE)

(no "SAP(SNP)/Variant" information available for 1JRE)

Asymmetric/Biological Unit (2, 24)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DPS_1	PS00818	Dps protein family signature 1.	DPS_ECOLI	51-67	12	A:51-67 B:51-67 C:51-67 D:51-67 E:51-67 F:51-67 G:51-67 H:51-67 I:51-67 J:51-67 K:51-67 L:51-67
2	DPS_2	PS00819	Dps protein family signature 2.	DPS_ECOLI	77-91	12	A:77-91 B:77-91 C:77-91 D:77-91 E:77-91 F:77-91 G:77-91 H:77-91 I:77-91 J:77-91 K:77-91 L:77-91

(no "Exon" information available for 1JRE)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:157
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:157
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       
            DPS_ECOLI    11 ATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1jrea_ A: Dodecameric ferritin homolog                                                                                                                       SCOP domains
               CATH domains 1jreA00 A:11-167  [code=1.20.1260.10, no name defined]                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jre A  11 ATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALICHLATMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain B from PDB  Type:PROTEIN  Length:157
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:157
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       
            DPS_ECOLI    11 ATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1jreb_ B: Dodecameric ferritin homolog                                                                                                                       SCOP domains
               CATH domains 1jreB00 B:11-167  [code=1.20.1260.10, no name defined]                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jre B  11 ATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALICHLATMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain C from PDB  Type:PROTEIN  Length:155
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:155
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162     
            DPS_ECOLI    13 NLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1jrec_ C: Dodecameric ferritin homolog                                                                                                                     SCOP domains
               CATH domains 1jreC00 C:13-167  [code=1.20.1260.10, no name defined]                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jre C  13 NLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALICHLATMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162

Chain D from PDB  Type:PROTEIN  Length:157
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:157
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       
            DPS_ECOLI    11 ATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1jred_ D: Dodecameric ferritin homolog                                                                                                                       SCOP domains
               CATH domains 1jreD00 D:11-167  [code=1.20.1260.10, no name defined]                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jre D  11 ATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALICHLATMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain E from PDB  Type:PROTEIN  Length:156
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:156
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
            DPS_ECOLI    12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1jree_ E: Dodecameric ferritin homolog                                                                                                                      SCOP domains
               CATH domains 1jreE00 E:12-167  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1jre E  12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALICHLATMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161

Chain F from PDB  Type:PROTEIN  Length:156
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:156
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
            DPS_ECOLI    12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1jref_ F: Dodecameric ferritin homolog                                                                                                                      SCOP domains
               CATH domains 1jreF00 F:12-167  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1jre F  12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALICHLATMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161

Chain G from PDB  Type:PROTEIN  Length:155
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:155
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162     
            DPS_ECOLI    13 NLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1jreg_ G: Dodecameric ferritin homolog                                                                                                                     SCOP domains
               CATH domains 1jreG00 G:13-167  [code=1.20.1260.10, no name defined]                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jre G  13 NLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALICHLATMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162

Chain H from PDB  Type:PROTEIN  Length:157
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:157
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       
            DPS_ECOLI    11 ATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1jreh_ H: Dodecameric ferritin homolog                                                                                                                       SCOP domains
               CATH domains 1jreH00 H:11-167  [code=1.20.1260.10, no name defined]                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jre H  11 ATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALICHLATMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain I from PDB  Type:PROTEIN  Length:156
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:156
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
            DPS_ECOLI    12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1jrei_ I: Dodecameric ferritin homolog                                                                                                                      SCOP domains
               CATH domains 1jreI00 I:12-167  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1jre I  12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALICHLATMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161

Chain J from PDB  Type:PROTEIN  Length:155
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:155
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162     
            DPS_ECOLI    13 NLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1jrej_ J: Dodecameric ferritin homolog                                                                                                                     SCOP domains
               CATH domains 1jreJ00 J:13-167  [code=1.20.1260.10, no name defined]                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jre J  13 NLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALICHLATMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162

Chain K from PDB  Type:PROTEIN  Length:155
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:155
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162     
            DPS_ECOLI    13 NLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1jrek_ K: Dodecameric ferritin homolog                                                                                                                     SCOP domains
               CATH domains 1jreK00 K:13-167  [code=1.20.1260.10, no name defined]                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jre K  13 NLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALICHLATMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162

Chain L from PDB  Type:PROTEIN  Length:155
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:155
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162     
            DPS_ECOLI    13 NLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1jrel_ L: Dodecameric ferritin homolog                                                                                                                     SCOP domains
               CATH domains 1jreL00 L:13-167  [code=1.20.1260.10, no name defined]                                                                                                      CATH domains
           Pfam domains (1) -----------------Ferritin-1jreL01 L:30-167                                                                                                                  Pfam domains (1)
           Pfam domains (2) -----------------Ferritin-1jreL02 L:30-167                                                                                                                  Pfam domains (2)
           Pfam domains (3) -----------------Ferritin-1jreL03 L:30-167                                                                                                                  Pfam domains (3)
           Pfam domains (4) -----------------Ferritin-1jreL04 L:30-167                                                                                                                  Pfam domains (4)
           Pfam domains (5) -----------------Ferritin-1jreL05 L:30-167                                                                                                                  Pfam domains (5)
           Pfam domains (6) -----------------Ferritin-1jreL06 L:30-167                                                                                                                  Pfam domains (6)
           Pfam domains (7) -----------------Ferritin-1jreL07 L:30-167                                                                                                                  Pfam domains (7)
           Pfam domains (8) -----------------Ferritin-1jreL08 L:30-167                                                                                                                  Pfam domains (8)
           Pfam domains (9) -----------------Ferritin-1jreL09 L:30-167                                                                                                                  Pfam domains (9)
          Pfam domains (10) -----------------Ferritin-1jreL10 L:30-167                                                                                                                  Pfam domains (10)
          Pfam domains (11) -----------------Ferritin-1jreL11 L:30-167                                                                                                                  Pfam domains (11)
          Pfam domains (12) -----------------Ferritin-1jreL12 L:30-167                                                                                                                  Pfam domains (12)
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jre L  13 NLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALICHLATMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Ferritin-like (533)

Superfamily: Ferritin-like (489)

Family: Ferritin (232)

Protein domain: Dodecameric ferritin homolog (44)

Escherichia coli, Dps [TaxId: 562] (7)

1a	d1jrea_	A:
1b	d1jreb_	B:
1c	d1jrec_	C:
1d	d1jred_	D:
1e	d1jree_	E:
1f	d1jref_	F:
1g	d1jreg_	G:
1h	d1jreh_	H:
1i	d1jrei_	I:
1j	d1jrej_	J:
1k	d1jrek_	K:
1l	d1jrel_	L:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Up-down Bundle (3216)

Topology: Ferritin; (180)

Homologous Superfamily: [code=1.20.1260.10, no name defined] (180)

Escherichia coli. Organism_taxid: 562. (4)

1a	1jreA00	A:11-167
1b	1jreB00	B:11-167
1c	1jreK00	K:13-167
1d	1jreL00	L:13-167
1e	1jreD00	D:11-167
1f	1jreH00	H:11-167
1g	1jreE00	E:12-167
1h	1jreF00	F:12-167
1i	1jreI00	I:12-167
1j	1jreC00	C:13-167
1k	1jreG00	G:13-167
1l	1jreJ00	J:13-167

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Ferritin (185)

Family: Ferritin (83)

Escherichia coli (strain K12) (4)

1a	Ferritin-1jreL01	L:30-167
1b	Ferritin-1jreL02	L:30-167
1c	Ferritin-1jreL03	L:30-167
1d	Ferritin-1jreL04	L:30-167
1e	Ferritin-1jreL05	L:30-167
1f	Ferritin-1jreL06	L:30-167
1g	Ferritin-1jreL07	L:30-167
1h	Ferritin-1jreL08	L:30-167
1i	Ferritin-1jreL09	L:30-167
1j	Ferritin-1jreL10	L:30-167
1k	Ferritin-1jreL11	L:30-167
1l	Ferritin-1jreL12	L:30-167

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H,I,J,K,L (DPS_ECOLI | P0ABT2)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0008199	ferric iron binding	Interacting selectively and non-covalently with ferric iron, Fe(III).
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016722	oxidoreductase activity, oxidizing metal ions	Catalysis of an oxidation-reduction in which the oxidation state of metal ion is altered.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0006879	cellular iron ion homeostasis	Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
	GO:0030261	chromosome condensation	The progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division, or during apoptosis, in eukaryotic cells.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0042594	response to starvation	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment.
	GO:0006950	response to stress	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0009295	nucleoid	The region of a virus, bacterial cell, mitochondrion or chloroplast to which the nucleic acid is confined.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
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	1jre
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	DPS_ECOLI \| P0ABT2	:	1dps 1f30 1f33 1jts 1l8h 1l8i 2w9r 3o2h

1dps	1DPS CONTAINS THE STRUCTURE OF APO DPS IN A DIFFERENT SPACE GROUP
1f30	1F30 CONTAINS THE WT PROTEIN WITH ZINC IN SPACE GROUP C2221
1f33	1F33 CONTAINS THE APO WT PROTEIN IN SPACE GROUP C2221

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 25)

Sites (25, 25)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 24)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 12)

CATH Domains (1, 12)

Pfam Domains (1, 12)

Gene Ontology (14, 14)

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