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1F30
Biol. Unit 2
Info
Asym.Unit (320 KB)
Biol.Unit 1 (317 KB)
Biol.Unit 2 (306 KB)
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(1)
Title
:
THE STRUCTURAL BASIS FOR DNA PROTECTION BY E. COLI DPS PROTEIN
Authors
:
J. Luo, D. Liu, M. A. White, R. O. Fox
Date
:
31 May 00 (Deposition) - 17 Jun 03 (Release) - 18 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (2x)
Biol. Unit 2: G,H,I,J,K,L (2x)
Keywords
:
Dodecamer, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Luo, D. Liu, M. A. White, R. O. Fox
The Structural Basis For Dna Protection By E. Coli Dps Protein
To Be Published
[
close entry info
]
Hetero Components
(1, 12)
Info
All Hetero Components
1a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
1b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
1c: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSc)
1d: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSd)
1e: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSe)
1f: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSf)
1g: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSg)
1h: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSh)
1i: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSi)
1j: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSj)
1k: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSk)
1l: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSl)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
2h: ZINC ION (ZNh)
2i: ZINC ION (ZNi)
2j: ZINC ION (ZNj)
2k: ZINC ION (ZNk)
2l: ZINC ION (ZNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
TRS
12
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2
ZN
-1
Ligand/Ion
ZINC ION
[
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]
Sites
(12, 12)
Info
All Sites
01: AC7 (SOFTWARE)
02: AC8 (SOFTWARE)
03: AC9 (SOFTWARE)
04: BC1 (SOFTWARE)
05: BC2 (SOFTWARE)
06: BC3 (SOFTWARE)
07: CC1 (SOFTWARE)
08: CC2 (SOFTWARE)
09: CC3 (SOFTWARE)
10: CC4 (SOFTWARE)
11: CC5 (SOFTWARE)
12: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC7
SOFTWARE
HIS G:51 , ASP H:78 , GLU H:82
BINDING SITE FOR RESIDUE ZN H 201
02
AC8
SOFTWARE
ASP G:78 , GLU G:82 , HIS H:51 , HIS H:63 , HOH H:210
BINDING SITE FOR RESIDUE ZN G 201
03
AC9
SOFTWARE
HIS I:51 , HOH I:608 , HOH I:611 , ASP J:78 , GLU J:82
BINDING SITE FOR RESIDUE ZN J 201
04
BC1
SOFTWARE
ASP I:78 , GLU I:82 , HIS J:51 , HOH J:622 , HOH J:624
BINDING SITE FOR RESIDUE ZN I 201
05
BC2
SOFTWARE
HIS K:51 , ASP K:78 , GLU K:82 , HOH K:611 , HOH K:613
BINDING SITE FOR RESIDUE ZN K 201
06
BC3
SOFTWARE
HOH H:205 , HIS L:51 , ASP L:78 , GLU L:82
BINDING SITE FOR RESIDUE ZN L 201
07
CC1
SOFTWARE
ASP G:146 , ASP I:146 , ASP K:146
BINDING SITE FOR RESIDUE TRS I 607
08
CC2
SOFTWARE
GLU H:167 , ALA I:57 , GLU I:167 , ALA L:57 , GLU L:167
BINDING SITE FOR RESIDUE TRS L 608
09
CC3
SOFTWARE
GLU I:64 , GLU L:64
BINDING SITE FOR RESIDUE TRS L 609
10
CC4
SOFTWARE
GLU G:64 , HOH J:616 , GLU K:64
BINDING SITE FOR RESIDUE TRS K 610
11
CC5
SOFTWARE
ALA G:57 , GLU G:167 , ALA J:57 , GLU J:167 , GLU K:167
BINDING SITE FOR RESIDUE TRS J 611
12
CC6
SOFTWARE
ASP H:146 , ALA H:150 , ASP J:146 , ASP L:146
BINDING SITE FOR RESIDUE TRS J 612
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 24)
Info
All PROSITE Patterns/Profiles
1: DPS_1 (G:51-67,H:51-67,I:51-67,J:51-67,K:...)
2: DPS_2 (G:77-91,H:77-91,I:77-91,J:77-91,K:...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DPS_1
PS00818
Dps protein family signature 1.
DPS_ECOLI
51-67
12
-
-
-
-
-
-
G:51-67
H:51-67
I:51-67
J:51-67
K:51-67
L:51-67
2
DPS_2
PS00819
Dps protein family signature 2.
DPS_ECOLI
77-91
12
-
-
-
-
-
-
G:77-91
H:77-91
I:77-91
J:77-91
K:77-91
L:77-91
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1f30a_ (A:)
1b: SCOP_d1f30b_ (B:)
1c: SCOP_d1f30c_ (C:)
1d: SCOP_d1f30d_ (D:)
1e: SCOP_d1f30e_ (E:)
1f: SCOP_d1f30f_ (F:)
1g: SCOP_d1f30g_ (G:)
1h: SCOP_d1f30h_ (H:)
1i: SCOP_d1f30i_ (I:)
1j: SCOP_d1f30j_ (J:)
1k: SCOP_d1f30k_ (K:)
1l: SCOP_d1f30l_ (L:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
Dodecameric ferritin homolog
(44)
Escherichia coli, Dps [TaxId: 562]
(7)
1a
d1f30a_
A:
1b
d1f30b_
B:
1c
d1f30c_
C:
1d
d1f30d_
D:
1e
d1f30e_
E:
1f
d1f30f_
F:
1g
d1f30g_
G:
1h
d1f30h_
H:
1i
d1f30i_
I:
1j
d1f30j_
J:
1k
d1f30k_
K:
1l
d1f30l_
L:
[
close SCOP info
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1f30A00 (A:12-167)
1b: CATH_1f30B00 (B:12-167)
1c: CATH_1f30C00 (C:12-167)
1d: CATH_1f30D00 (D:12-167)
1e: CATH_1f30E00 (E:12-167)
1f: CATH_1f30F00 (F:12-167)
1g: CATH_1f30G00 (G:12-167)
1h: CATH_1f30H00 (H:12-167)
1i: CATH_1f30I00 (I:12-167)
1j: CATH_1f30J00 (J:12-167)
1k: CATH_1f30K00 (K:12-167)
1l: CATH_1f30L00 (L:12-167)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Escherichia coli. Organism_taxid: 562.
(3)
1a
1f30A00
A:12-167
1b
1f30B00
B:12-167
1c
1f30C00
C:12-167
1d
1f30D00
D:12-167
1e
1f30E00
E:12-167
1f
1f30F00
F:12-167
1g
1f30G00
G:12-167
1h
1f30H00
H:12-167
1i
1f30I00
I:12-167
1j
1f30J00
J:12-167
1k
1f30K00
K:12-167
1l
1f30L00
L:12-167
[
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain K
Chain L
Asymmetric Unit 1
Asymmetric Unit 2
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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