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1F30
Asym. Unit
Info
Asym.Unit (320 KB)
Biol.Unit 1 (317 KB)
Biol.Unit 2 (306 KB)
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(1)
Title
:
THE STRUCTURAL BASIS FOR DNA PROTECTION BY E. COLI DPS PROTEIN
Authors
:
J. Luo, D. Liu, M. A. White, R. O. Fox
Date
:
31 May 00 (Deposition) - 17 Jun 03 (Release) - 18 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (2x)
Biol. Unit 2: G,H,I,J,K,L (2x)
Keywords
:
Dodecamer, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Luo, D. Liu, M. A. White, R. O. Fox
The Structural Basis For Dna Protection By E. Coli Dps Protein
To Be Published
[
close entry info
]
Hetero Components
(2, 24)
Info
All Hetero Components
1a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
1b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
1c: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSc)
1d: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSd)
1e: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSe)
1f: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSf)
1g: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSg)
1h: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSh)
1i: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSi)
1j: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSj)
1k: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSk)
1l: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSl)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
2h: ZINC ION (ZNh)
2i: ZINC ION (ZNi)
2j: ZINC ION (ZNj)
2k: ZINC ION (ZNk)
2l: ZINC ION (ZNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
TRS
12
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2
ZN
12
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:51 , HOH A:614 , ASP B:78 , GLU B:82
BINDING SITE FOR RESIDUE ZN B 201
02
AC2
SOFTWARE
ASP A:78 , GLU A:82 , HIS B:51 , HOH B:242 , HOH B:247
BINDING SITE FOR RESIDUE ZN A 201
03
AC3
SOFTWARE
HIS C:51 , ASP C:78 , GLU C:82 , HOH C:645 , HOH C:651
BINDING SITE FOR RESIDUE ZN C 201
04
AC4
SOFTWARE
HIS D:51 , HIS D:63 , ASP D:78 , GLU D:82 , HOH D:454 , HOH D:458
BINDING SITE FOR RESIDUE ZN D 201
05
AC5
SOFTWARE
HIS E:51 , HOH E:657 , ASP F:78 , GLU F:82
BINDING SITE FOR RESIDUE ZN F 201
06
AC6
SOFTWARE
ASP E:78 , GLU E:82 , HIS F:51 , HOH F:257
BINDING SITE FOR RESIDUE ZN E 201
07
AC7
SOFTWARE
HIS G:51 , ASP H:78 , GLU H:82
BINDING SITE FOR RESIDUE ZN H 201
08
AC8
SOFTWARE
ASP G:78 , GLU G:82 , HIS H:51 , HIS H:63 , HOH H:210
BINDING SITE FOR RESIDUE ZN G 201
09
AC9
SOFTWARE
HIS I:51 , HOH I:608 , HOH I:611 , ASP J:78 , GLU J:82
BINDING SITE FOR RESIDUE ZN J 201
10
BC1
SOFTWARE
ASP I:78 , GLU I:82 , HIS J:51 , HOH J:622 , HOH J:624
BINDING SITE FOR RESIDUE ZN I 201
11
BC2
SOFTWARE
HIS K:51 , ASP K:78 , GLU K:82 , HOH K:611 , HOH K:613
BINDING SITE FOR RESIDUE ZN K 201
12
BC3
SOFTWARE
HOH H:205 , HIS L:51 , ASP L:78 , GLU L:82
BINDING SITE FOR RESIDUE ZN L 201
13
BC4
SOFTWARE
ALA A:57 , GLU A:167 , HOH A:655 , ALA D:57 , GLU D:167 , ALA E:57 , GLU E:167
BINDING SITE FOR RESIDUE TRS A 601
14
BC5
SOFTWARE
GLU A:64 , GLU D:64 , HOH D:414 , GLU E:64 , HOH E:659 , HOH E:663
BINDING SITE FOR RESIDUE TRS A 602
15
BC6
SOFTWARE
ASP B:146 , ASP C:146 , ASP E:146
BINDING SITE FOR RESIDUE TRS E 603
16
BC7
SOFTWARE
GLU B:64 , HOH B:217 , GLU C:64 , HOH C:669 , HOH C:672 , GLU F:64
BINDING SITE FOR RESIDUE TRS C 604
17
BC8
SOFTWARE
GLU B:167 , GLU C:167 , ALA F:57 , GLU F:167 , HOH F:168 , HOH F:173
BINDING SITE FOR RESIDUE TRS F 605
18
BC9
SOFTWARE
ASP A:146 , HOH A:641 , ASP D:146 , ASP F:146
BINDING SITE FOR RESIDUE TRS D 606
19
CC1
SOFTWARE
ASP G:146 , ASP I:146 , ASP K:146
BINDING SITE FOR RESIDUE TRS I 607
20
CC2
SOFTWARE
GLU H:167 , ALA I:57 , GLU I:167 , ALA L:57 , GLU L:167
BINDING SITE FOR RESIDUE TRS L 608
21
CC3
SOFTWARE
GLU I:64 , GLU L:64
BINDING SITE FOR RESIDUE TRS L 609
22
CC4
SOFTWARE
GLU G:64 , HOH J:616 , GLU K:64
BINDING SITE FOR RESIDUE TRS K 610
23
CC5
SOFTWARE
ALA G:57 , GLU G:167 , ALA J:57 , GLU J:167 , GLU K:167
BINDING SITE FOR RESIDUE TRS J 611
24
CC6
SOFTWARE
ASP H:146 , ALA H:150 , ASP J:146 , ASP L:146
BINDING SITE FOR RESIDUE TRS J 612
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 24)
Info
All PROSITE Patterns/Profiles
1: DPS_1 (A:51-67,B:51-67,C:51-67,D:51-67,E:...)
2: DPS_2 (A:77-91,B:77-91,C:77-91,D:77-91,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DPS_1
PS00818
Dps protein family signature 1.
DPS_ECOLI
51-67
12
A:51-67
B:51-67
C:51-67
D:51-67
E:51-67
F:51-67
G:51-67
H:51-67
I:51-67
J:51-67
K:51-67
L:51-67
2
DPS_2
PS00819
Dps protein family signature 2.
DPS_ECOLI
77-91
12
A:77-91
B:77-91
C:77-91
D:77-91
E:77-91
F:77-91
G:77-91
H:77-91
I:77-91
J:77-91
K:77-91
L:77-91
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1f30a_ (A:)
1b: SCOP_d1f30b_ (B:)
1c: SCOP_d1f30c_ (C:)
1d: SCOP_d1f30d_ (D:)
1e: SCOP_d1f30e_ (E:)
1f: SCOP_d1f30f_ (F:)
1g: SCOP_d1f30g_ (G:)
1h: SCOP_d1f30h_ (H:)
1i: SCOP_d1f30i_ (I:)
1j: SCOP_d1f30j_ (J:)
1k: SCOP_d1f30k_ (K:)
1l: SCOP_d1f30l_ (L:)
View:
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Classes
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)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
Dodecameric ferritin homolog
(44)
Escherichia coli, Dps [TaxId: 562]
(7)
1a
d1f30a_
A:
1b
d1f30b_
B:
1c
d1f30c_
C:
1d
d1f30d_
D:
1e
d1f30e_
E:
1f
d1f30f_
F:
1g
d1f30g_
G:
1h
d1f30h_
H:
1i
d1f30i_
I:
1j
d1f30j_
J:
1k
d1f30k_
K:
1l
d1f30l_
L:
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1f30A00 (A:12-167)
1b: CATH_1f30B00 (B:12-167)
1c: CATH_1f30C00 (C:12-167)
1d: CATH_1f30D00 (D:12-167)
1e: CATH_1f30E00 (E:12-167)
1f: CATH_1f30F00 (F:12-167)
1g: CATH_1f30G00 (G:12-167)
1h: CATH_1f30H00 (H:12-167)
1i: CATH_1f30I00 (I:12-167)
1j: CATH_1f30J00 (J:12-167)
1k: CATH_1f30K00 (K:12-167)
1l: CATH_1f30L00 (L:12-167)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Escherichia coli. Organism_taxid: 562.
(3)
1a
1f30A00
A:12-167
1b
1f30B00
B:12-167
1c
1f30C00
C:12-167
1d
1f30D00
D:12-167
1e
1f30E00
E:12-167
1f
1f30F00
F:12-167
1g
1f30G00
G:12-167
1h
1f30H00
H:12-167
1i
1f30I00
I:12-167
1j
1f30J00
J:12-167
1k
1f30K00
K:12-167
1l
1f30L00
L:12-167
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Atom Selection
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Protein & NOT Site
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Chain G
Chain H
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Chain J
Chain K
Chain L
Asymmetric Unit 1
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