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(-) Description

Title :  STRUCTURE OF THE FIBRINOGEN G CHAIN INTEGRIN BINDING AND FACTOR XIIIA CROSSLINKING SITES OBTAINED THROUGH CARRIER PROTEIN DRIVEN CRYSTALLIZATION
 
Authors :  S. Ware, J. P. Donahue, J. Hawiger, W. F. Anderson
Date :  17 Jan 00  (Deposition) - 02 Feb 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Gamma Chain Integrin Fragment, Carrier Protein Driven Crystallization, Transferase, Blood Clotting (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Ware, J. P. Donahue, J. Hawiger, W. F. Anderson
Structure Of The Fibrinogen Gamma-Chain Integrin Binding And Factor Xiiia Cross-Linking Sites Obtained Through Carrier Protein Driven Crystallization.
Protein Sci. V. 8 2663 1999
PubMed-ID: 10631982
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CHIMERA OF GLUTATHIONE S-TRANSFERASE-SYNTHETIC LINKER-C-TERMINAL FIBRINOGEN GAMMA CHAIN
    Chains: A, B
    EC Number: 2.5.1.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: DH5ALPHA
    Expression System Taxid: 562
    Organism Scientific: SCHISTOSOMA JAPONICUM
    Organism Taxid: 6182
    Other Details: GLUTATHIONE S-TRANSFERASE (RESIDUES 1-217) BOUND TO SYNTHETIC SDP LINKER (RESIDUES 218-220) BOUND TO C-TERMINAL FIBRINOGEN GAMMA CHAIN (RESIDUES 221-234)
    Other Details - Source: EUKARYOTA;
METAZOA;
PLATYHELMINTHES;
TREMATODA;
DIGENEA;
STRIGEIDIDA;
SCHISTOSOMATOIDEA;
SCHISTOSOMATIDAE;
SCHISTOSOMA

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1GSH2Ligand/IonGLUTATHIONE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:6 , TRP A:7 , LEU A:12 , TRP A:40 , LYS A:44 , ASN A:53 , LEU A:54 , PRO A:55 , GLN A:66 , SER A:67 , HOH A:1243 , HOH A:1244 , HOH A:1258 , HOH A:1352 , HOH A:1363 , HOH A:1529 , HOH A:1545 , ASP B:100 , HOH B:1689 , HOH B:1711BINDING SITE FOR RESIDUE GSH A 1239
2AC2SOFTWAREASP A:100 , HOH A:1249 , TYR B:6 , TRP B:7 , LEU B:12 , TRP B:40 , LYS B:44 , ASN B:53 , LEU B:54 , PRO B:55 , GLN B:66 , SER B:67 , HOH B:1588 , HOH B:1590 , HOH B:1605 , HOH B:1728 , HOH B:1829 , HOH B:1833 , HOH B:1840BINDING SITE FOR RESIDUE GSH B 1587

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1DUG)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Leu A:54 -Pro A:55
2Trp A:200 -Pro A:201
3Leu B:54 -Pro B:55
4Trp B:200 -Pro B:201

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1DUG)

(-) PROSITE Motifs  (1, 2)

Asymmetric/Biological Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GST_CTERPS50405 Soluble glutathione S-transferase C-terminal domain profile.GST26_SCHJA85-203
 		  2A:84-202
B:84-202

(-) Exons   (0, 0)

(no "Exon" information available for 1DUG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:234
 aligned with GST26_SCHJA | P08515 from UniProtKB/Swiss-Prot  Length:218

    Alignment length:234
                                                                                                                                                                                                                                                  218                 
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211      |  -         -    
          GST26_SCHJA     2 SPILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRYIADKHNMLGGCPKERAEISMLEGAVLDIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDVVLYMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKSSKYIAWPLQGWQATFGGGDHPPK-----------------   -
               SCOP domains d1duga2 A:1-80 Class alpha GST                                                  d1duga1 A:81-220 Class alpha GST                                                                                                            -------------- SCOP domains
               CATH domains 1dugA01 A:1-80,A:186-212 Glutaredoxin                                           1dugA02 A:81-185  [code=1.20.1050.10, no name defined]                                                   1dugA01 A:1-80,A:186-212   ---------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhhhhh...eeeee...hhhhhhhhh...........eee....eeehhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh......................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------GST_CTER  PDB: A:84-202 UniProt: 85-203                                                                                -------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1dug A   1 SPILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRYIADKHNMLGGCPKERAEISMLEGAVLDIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDVVLYMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKSSKYIAWPLQGWQATFGGGDHPPKSDPQQHHLGGAKQAGDV 234
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230    


Chain B from PDB  Type:PROTEIN  Length:234
 aligned with GST26_SCHJA | P08515 from UniProtKB/Swiss-Prot  Length:218

    Alignment length:234
                                                                                                                                                                                                                                                  218                 
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211      |  -         -    
          GST26_SCHJA     2 SPILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRYIADKHNMLGGCPKERAEISMLEGAVLDIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDVVLYMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKSSKYIAWPLQGWQATFGGGDHPPK-----------------   -
               SCOP domains d1dugb2 B:1-80 Class alpha GST                                                  d1dugb1 B:81-220 Class alpha GST                                                                                                            -------------- SCOP domains
               CATH domains 1dugB01 B:1-80,B:186-212 Glutaredoxin                                           1dugB02 B:81-185  [code=1.20.1050.10, no name defined]                                                   1dugB01 B:1-80,B:186-212   ---------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhhhh....eeeee...hhhhhhhhh...........eeee..eeeehhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh......................................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------GST_CTER  PDB: B:84-202 UniProt: 85-203                                                                                -------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1dug B   1 SPILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRYIADKHNMLGGCPKERAEISMLEGAVLDIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDVVLYMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKSSKYIAWPLQGWQATFGGGDHPPKSDPQQHHLGGAKQAGDV 234
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1DUG)

(-) Gene Ontology  (44, 44)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (GST26_SCHJA | P08515)
molecular function
    GO:0004364    glutathione transferase activity    Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

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  1dug
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  GST26_SCHJA | P08515
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  2.5.1.18
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FIBG_HUMAN | P02679: 1fib 1fic 1fid 1fza 1fzb 1fzc 1fze 1fzf 1fzg 1lt9 1ltj 1n86 1n8e 1re3 1re4 1rf0 1rf1 2a45 2ffd 2fib 2h43 2hlo 2hod 2hpc 2hwl 2oyh 2oyi 2q9i 2vdo 2vdp 2vdq 2vdr 2vr3 2xnx 2xny 2y7l 2z4e 3bvh 3e1i 3fib 3ghg 3h32 3hus 4b60
        GST26_SCHJA | P08515: 1b8x 1bg5 1gne 1gta 1gtb 1m99 1m9a 1m9b 1u87 1u88 1ua5 1y6e 3crt 3cru 3d0z 3qmz 4ai6 4akg 4akh 4aki 4ecb 4ecc 4wr4 4wr5 5gzz

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1DUG)