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(-) Description

Title :  ORTHORHOMBIC CRYSTAL FORM OF HEAT SHOCK LOCUS U (HSLU) FROM ESCHERICHIA COLI
 
Authors :  M. Bochtler, C. Hartmann, H. K. Song, G. P. Bourenkov, H. D. Bartunik
Date :  18 Dec 99  (Deposition) - 18 Feb 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Hslu, Clpy, Aaa-Atpase, Atp-Dependent Proteolysis, Atpase, Proteasome, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Bochtler, C. Hartmann, H. K. Song, G. P. Bourenkov, H. D. Bartunik, R. Huber
The Structures Of Hsiu And The Atp-Dependent Protease Hsiu-Hsiv.
Nature V. 403 800 2000
PubMed-ID: 10693812  |  Reference-DOI: 10.1038/35001629
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (HEAT SHOCK LOCUS U)
    Cellular Location: CYTOPLASM
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET12B (T7 PROMOTOR)
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Strain: XL-1 BLUE

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
1ATP4Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2MG2Ligand/IonMAGNESIUM ION
3SO42Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO C:58 , GLY C:60 , VAL C:61 , GLY C:62 , LYS C:63 , THR C:64 , ARG C:393BINDING SITE FOR RESIDUE SO4 C 800
2AC2SOFTWAREPRO F:58 , GLY F:60 , VAL F:61 , GLY F:62 , LYS F:63 , THR F:64 , ARG F:393BINDING SITE FOR RESIDUE SO4 F 805
3AC3SOFTWARELYS B:63 , ASP B:256 , ATP B:905BINDING SITE FOR RESIDUE MG B 600
4AC4SOFTWARELYS E:63 , ASP E:256 , ATP E:915BINDING SITE FOR RESIDUE MG E 605
5AC5SOFTWAREHIS A:16 , ILE A:17 , ILE A:18 , PRO A:58 , THR A:59 , GLY A:60 , VAL A:61 , GLY A:62 , LYS A:63 , THR A:64 , GLU A:65 , LYS A:80 , ASP A:256 , LEU A:335 , ALA A:392 , ARG A:393 , HIS A:396 , GLU B:321BINDING SITE FOR RESIDUE ATP A 900
6AC6SOFTWAREHIS B:16 , ILE B:17 , ILE B:18 , PRO B:58 , THR B:59 , GLY B:60 , VAL B:61 , GLY B:62 , LYS B:63 , THR B:64 , GLU B:65 , LYS B:80 , ASP B:256 , SER B:307 , LEU B:335 , ILE B:343 , ALA B:392 , ARG B:393 , HIS B:396 , MG B:600 , GLU C:321BINDING SITE FOR RESIDUE ATP B 905
7AC7SOFTWAREHIS D:16 , ILE D:17 , ILE D:18 , PRO D:58 , THR D:59 , GLY D:60 , VAL D:61 , GLY D:62 , LYS D:63 , THR D:64 , GLU D:65 , LYS D:80 , ASP D:256 , LEU D:335 , ALA D:392 , ARG D:393 , HIS D:396 , GLU E:321BINDING SITE FOR RESIDUE ATP D 910
8AC8SOFTWAREHIS E:16 , ILE E:17 , ILE E:18 , PRO E:58 , THR E:59 , GLY E:60 , VAL E:61 , GLY E:62 , LYS E:63 , THR E:64 , GLU E:65 , LYS E:80 , ASP E:256 , SER E:307 , LEU E:335 , ALA E:392 , ARG E:393 , MG E:605 , GLU F:321BINDING SITE FOR RESIDUE ATP E 915

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1DO0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1DO0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1DO0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1DO0)

(-) Exons   (0, 0)

(no "Exon" information available for 1DO0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:406
 aligned with HSLU_ECOLI | P0A6H5 from UniProtKB/Swiss-Prot  Length:443

    Alignment length:442
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441  
           HSLU_ECOLI     2 SEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADEDLSRFIL 443
               SCOP domains d1do0a_ A: HslU                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 1do0A01 A:2-109,A:244-332 P-loop containing nucleotide triphosphate hydrolases                              1do0A02 A:110-243 DNA helicase RuvA subunit, C-terminal domain                                                                        1do0A01 A:2-109,A:244-332 P-loop containing nucleotide triphosphate hydrolases           --1do0A03 A:335-443  [code=1.10.8.60, no name defined]                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..hhhhhh......eeee.....hhhhhhhhhhhhhh..eeeee.hhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhh.....eee...------------------------------------.eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeee...........hhhhhhhhhhhhhhhhhhhh.eeee..eeee.hhheeeeee.....hhhhhhhhhhhh..eeee....hhhhhhhhhhh...hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1do0 A   2 SEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEID------------------------------------ARKLKIKDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADEDLSRFIL 443
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171    |    -         -         -         - |     221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441  
                                                                                                                                                                                                        176                                  213                                                                                                                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:406
 aligned with HSLU_ECOLI | P0A6H5 from UniProtKB/Swiss-Prot  Length:443

    Alignment length:442
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441  
           HSLU_ECOLI     2 SEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADEDLSRFIL 443
               SCOP domains d1do0b_ B: HslU                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 1do0B01 B:2-109,B:244-332 P-loop containing nucleotide triphosphate hydrolases                              1do0B02 B:110-243 DNA helicase RuvA subunit, C-terminal domain                                                                        1do0B01 B:2-109,B:244-332 P-loop containing nucleotide triphosphate hydrolases           --1do0B03 B:335-442  [code=1.10.8.60, no name defined]                                                        - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.hhhhhh......eeee.....hhhhhhhhhhhh....eeeee.hhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhh....eee...------------------------------------.eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeeehhhhhh.......hhhhhhhhhhhhhhhhhh.eeee..eeee....eeeeee.....hhhhhhhhhhhh..eeee....hhhhhhhhhhh...hhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1do0 B   2 SEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEID------------------------------------ARKLKIKDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADEDLSRFIL 443
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171    |    -         -         -         - |     221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441  
                                                                                                                                                                                                        176                                  213                                                                                                                                                                                                                                      


Chain C from PDB  Type:PROTEIN  Length:406
 aligned with HSLU_ECOLI | P0A6H5 from UniProtKB/Swiss-Prot  Length:443

    Alignment length:442
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441  
           HSLU_ECOLI     2 SEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADEDLSRFIL 443
               SCOP domains d1do0c_ C: HslU                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 1do0C01 C:2-109,C:244-332 P-loop containing nucleotide triphosphate hydrolases                              1do0C02 C:110-243 DNA helicase RuvA subunit, C-terminal domain                                                                        1do0C01 C:2-109,C:244-332 P-loop containing nucleotide triphosphate hydrolases           --1do0C03 C:335-442  [code=1.10.8.60, no name defined]                                                        - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..hhhhhhhh....eeee.....hhhhhhhhhhhhh...eeeee.hhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhh.....eee...------------------------------------.eeehhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhheeeeehhhhhh........hhhhhhhhh.hhhhhh....ee..ee......eeeeee.....hhhhhhhhhhhhh.eeee....hhhhhhhhhh....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1do0 C   2 SEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEID------------------------------------ARKLKIKDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADEDLSRFIL 443
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171    |    -         -         -         - |     221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441  
                                                                                                                                                                                                        176                                  213                                                                                                                                                                                                                                      


Chain D from PDB  Type:PROTEIN  Length:406
 aligned with HSLU_ECOLI | P0A6H5 from UniProtKB/Swiss-Prot  Length:443

    Alignment length:442
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441  
           HSLU_ECOLI     2 SEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADEDLSRFIL 443
               SCOP domains d1do0d_ D: HslU                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 1do0D01 D:2-109,D:244-332 P-loop containing nucleotide triphosphate hydrolases                              1do0D02 D:110-243 DNA helicase RuvA subunit, C-terminal domain                                                                        1do0D01 D:2-109,D:244-332 P-loop containing nucleotide triphosphate hydrolases           --1do0D03 D:335-442  [code=1.10.8.60, no name defined]                                                        - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..hhhhhh......eeee.....hhhhhhhhhhhhhh..eeeee.hhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh...............hhhhhhhhhhhhhh.....eee...------------------------------------.eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee...........hhhhhhhhhhhhhhhhhhhh.eeee..eeee.hhheeeeee.....hhhhhhhhhhhh..eeee....hhhhhhhhhhh...hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1do0 D   2 SEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEID------------------------------------ARKLKIKDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADEDLSRFIL 443
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171    |    -         -         -         - |     221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441  
                                                                                                                                                                                                        176                                  213                                                                                                                                                                                                                                      


Chain E from PDB  Type:PROTEIN  Length:406
 aligned with HSLU_ECOLI | P0A6H5 from UniProtKB/Swiss-Prot  Length:443

    Alignment length:442
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441  
           HSLU_ECOLI     2 SEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADEDLSRFIL 443
               SCOP domains d1do0e_ E: HslU                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 1do0E01 E:2-109,E:244-332 P-loop containing nucleotide triphosphate hydrolases                              1do0E02 E:110-243 DNA helicase RuvA subunit, C-terminal domain                                                                        1do0E01 E:2-109,E:244-332 P-loop containing nucleotide triphosphate hydrolases           --1do0E03 E:335-442  [code=1.10.8.60, no name defined]                                                        - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhh...eeeee.hhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh...............hhhhhhhhhhhhhh.....eee...------------------------------------.eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeeehhhhhh.......hhhhhhhhhhhhhhhhhh.eeee..eeee....eeeeee.....hhhhhhhhhhhhh.eeee....hhhhhhhhhhh...hhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1do0 E   2 SEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEID------------------------------------ARKLKIKDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADEDLSRFIL 443
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171    |    -         -         -         - |     221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441  
                                                                                                                                                                                                        176                                  213                                                                                                                                                                                                                                      


Chain F from PDB  Type:PROTEIN  Length:406
 aligned with HSLU_ECOLI | P0A6H5 from UniProtKB/Swiss-Prot  Length:443

    Alignment length:442
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441  
           HSLU_ECOLI     2 SEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEIDLAAAPMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADEDLSRFIL 443
               SCOP domains d1do0f_ F: HslU                                                                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 1do0F01 F:2-109,F:244-332 P-loop containing nucleotide triphosphate hydrolases                              1do0F02 F:110-243 DNA helicase RuvA subunit, C-terminal domain                                                                        1do0F01 F:2-109,F:244-332 P-loop containing nucleotide triphosphate hydrolases           --1do0F03 F:335-442  [code=1.10.8.60, no name defined]                                                        - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..hhhhhhhh....eeee.....hhhhhhhhhhhhh...eeeee.hhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhh.....eee...------------------------------------.eeehhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhheeeeehhhhhh........hhhhhhhhhhhhhhhh....ee..ee......eeeeee.....hhhhhhhhhhhhh.eeee....hhhhhhhhhhh...hhhhhhhhhhhh.....eehhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh....eehhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1do0 F   2 SEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFRKKLREGQLDDKEIEID------------------------------------ARKLKIKDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADEDLSRFIL 443
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171    |    -         -         -         - |     221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441  
                                                                                                                                                                                                        176                                  213
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (3, 18)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 3-Layer(aba) Sandwich (12045)
(-)
Topology: Rossmann fold (7312)
(-)
Homologous Superfamily: P-loop containing nucleotide triphosphate hydrolases (1378)
(-)
Escherichia coli. Organism_taxid: 562. Strain: xl-1 blue. (2)
1a1do0A01A:2-109,A:244-332
1b1do0B01B:2-109,B:244-332
1c1do0C01C:2-109,C:244-332
1d1do0D01D:2-109,D:244-332
1e1do0E01E:2-109,E:244-332
1f1do0F01F:2-109,F:244-332
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1DO0)

(-) Gene Ontology  (13, 13)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (HSLU_ECOLI | P0A6H5)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0070011    peptidase activity, acting on L-amino acid peptides    Catalysis of the hydrolysis of peptide bonds formed between L-amino acids.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0043335    protein unfolding    The process of assisting in the disassembly of non-covalent linkages in a protein or protein aggregate, often where the proteins are in a non-functional or denatured state.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0009408    response to heat    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
cellular component
    GO:0009376    HslUV protease complex    A protein complex that possesses ATP-dependent protease activity; consists of an ATPase large subunit with homology to other ClpX family ATPases and a peptidase small subunit related to the proteasomal beta-subunits of eukaryotes. In the E. coli complex, a double ring-shaped homohexamer of HslV is capped on each side by a ring-shaped HslU homohexamer.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  1do0
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HSLU_ECOLI | P0A6H5: 1do2 1e94 1g4a 1g4b 1hqy 1ht1 1ht2 1yyf 5ji3 5txv

(-) Related Entries Specified in the PDB File

1ned HSLU IS THE ACTIVATOR OF 1NED, HSLV