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(-) Description

Title :  HSLUV COMPLEX
 
Authors :  R. A. Grant, R. T. Sauer, K. R. Schmitz, V. Baytshtok
Date :  21 Apr 16  (Deposition) - 07 Dec 16  (Release) - 07 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C,D,E,F  (3x)
Keywords :  Aaa+ Atpase, Peptidase, Hslvu, Peptidase-Atpase Complex, Hydrolase Complex, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Baytshtok, X. Fei, R. A. Grant, T. A. Baker, R. T. Sauer
A Structurally Dynamic Region Of The Hslu Intermediate Domain Controls Protein Degradation And Atp Hydrolysis.
Structure V. 24 1766 2016
PubMed-ID: 27667691  |  Reference-DOI: 10.1016/J.STR.2016.08.012
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ATP-DEPENDENT PROTEASE SUBUNIT HSLV
    Chains: A, B, C, D
    EC Number: 3.4.25.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: HSLV, EC55989_4410
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: HEAT SHOCK PROTEIN HSLV
 
Molecule 2 - ATP-DEPENDENT PROTEASE ATPASE SUBUNIT HSLU
    Chains: E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: HSLU, HTPI, Z5478, ECS4858
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: HEAT SHOCK PROTEIN HSLU,UNFOLDASE HSLU

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (3x): ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1DAT2Ligand/Ion2'-DEOXYADENOSINE-5'-DIPHOSPHATE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1DAT6Ligand/Ion2'-DEOXYADENOSINE-5'-DIPHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS E:16 , ILE E:17 , ILE E:18 , GLY E:60 , VAL E:61 , GLY E:62 , LYS E:63 , THR E:64 , GLU E:65 , ILE E:343 , ALA E:392 , ARG E:393binding site for residue DAT E 501
2AC2SOFTWAREILE F:17 , ILE F:18 , PRO F:58 , THR F:59 , GLY F:60 , VAL F:61 , GLY F:62 , LYS F:63 , THR F:64 , GLU F:65 , ALA F:392 , ARG F:393binding site for residue DAT F 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JI3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5JI3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JI3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JI3)

(-) Exons   (0, 0)

(no "Exon" information available for 5JI3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:174
                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee..eeeeeee..eee..eeee.....eeee....eeeeeeehhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..eeeeee....eeeee....ee.hhhhheee..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh......eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5ji3 A   1 TTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDICIYTNHFHTIEELSYK 174
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    


Chain B from PDB  Type:PROTEIN  Length:174
                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee..eeeeeee..eee..eeee.....eeee....eeeeeeehhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..eeeeee....eeeee....ee.hhhhheee..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh......eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5ji3 B   1 TTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDICIYTNHFHTIEELSYK 174
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    


Chain C from PDB  Type:PROTEIN  Length:174
                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee..eeeeeee..eee..eeee.....eeee....eeeeeeehhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..eeeeee....eeee.....ee.hhhhheee..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh......eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5ji3 C   1 TTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDICIYTNHFHTIEELSYK 174
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    


Chain D from PDB  Type:PROTEIN  Length:174
                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee..eeeeeee..eee..eeee.....eeee....eeeeeeehhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..eeeeee....eeee.....ee.hhhhheee..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh......eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5ji3 D   1 TTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDICIYTNHFHTIEELSYK 174
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170    


Chain E from PDB  Type:PROTEIN  Length:375
                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.hhhhhhhh....eeee.....hhhhhhhhhhhhhh....eee.hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeeehhhhhh..hhhhhhhhhhhhhhhhhhh.eeee..eeee....eeeeee.....hhhhhhhhhhh...eeee....hhhhhhhhhhh...hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ji3 E   1 MSEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPPAEPSAARQAFRKKLREGQKIKDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADEDLSRFIL 443
                                    10        20        30        40        50        60        70        80       |94       104       114       124       134    || 155       165 ||    224       234       244       254       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438     
                                                                                                                  88|                                           139|             167|                                           263|                                                                                                                                                                               
                                                                                                                   93                                            151              217                                            268                                                                                                                                                                               


Chain F from PDB  Type:PROTEIN  Length:353
                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh.hhhhhhhh....eeee.....hhhhhhhhhhhhhh..eeeee.hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhheeeeehhhhhh....hhhhhhhhhhhhhhhhhhh.eeee..eeee....eeeeee.....hhhhhhhhhhh...eeee....hhhhhhhhhhh...hhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh......eeeehhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ji3 F   1 MSEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEPSAARQAFRKKLREGQLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADEDLSRFIL 443
                                    10        20        30        40        50        60        70        80       |94       104       114       151       161     ||228       238       248       258      |270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440   
                                                                                                                  88|                           123|             167|                                     265|                                                                                                                                                                               
                                                                                                                   93                            151              225                                      268
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JI3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JI3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JI3)

(-) Gene Ontology  (22, 49)

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  HSLV_ECO55 | B7LA29
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HSLU_ECO57 | P0A6H6: 1e94 5ji2
        HSLU_ECOLI | P0A6H5: 1do0 1do2 1e94 1g4a 1g4b 1hqy 1ht1 1ht2 1yyf 5txv
        HSLV_ECO55 | B7LA29: 5ji2
        HSLV_ECOLI | P0A7B8: 1e94 1g4a 1g4b 1hqy 1ht1 1ht2 1ned 4g4e

(-) Related Entries Specified in the PDB File

1g4a WE HAVE RE-REFINED THIS STRUCTURE FROM ANOTHER LAB TO IMPROVE MODEL GEOMETRY