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(-) Description

Title :  CRYSTAL STRUCTURE OF HSLV (CLPQ) AT 3.8 ANGSTROMS RESOLUTION
 
Authors :  M. Bochtler, L. Ditzel, M. Groll, R. Huber
Date :  04 Apr 97  (Deposition) - 08 Apr 98  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.80
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (4x)
Keywords :  Hslv, Clpq, Hslvu, Clpqy, Atp-Dependent Protease, Proteasome, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Bochtler, L. Ditzel, M. Groll, R. Huber
Crystal Structure Of Heat Shock Locus V (Hslv) From Escherichia Coli.
Proc. Natl. Acad. Sci. Usa V. 94 6070 1997
PubMed-ID: 9177170  |  Reference-DOI: 10.1073/PNAS.94.12.6070
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HSLV
    Cellular LocationCYTOPLASM
    ChainsA, B, C
    EC Number3.4.99.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism ScientificESCHERICHIA COLI
    Organism Taxid562
    StrainXL-1 BLUE

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit ABC
Biological Unit 1 (4x)ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1NED)

(-) Sites  (0, 0)

(no "Site" information available for 1NED)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NED)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1NED)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1NED)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1NED)

(-) Exons   (0, 0)

(no "Exon" information available for 1NED)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:180
 aligned with HSLV_ECOLI | P0A7B8 from UniProtKB/Swiss-Prot  Length:176

    Alignment length:180
                                                                                                                                                                                                        176     
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171    |    -
           HSLV_ECOLI     2 TTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDICIYTNHFHTIEELSYKA-----   -
               SCOP domains d1neda_ A: HslV (ClpQ) protease                                                                                                                                                      SCOP domains
               CATH domains 1nedA00 A:1-187 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee..eeeeee..eeee..eeeee....eeeehhh.eeeeee..hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.....hhh...eeeeee...eeeee...eee.......eee..hhhhhhhhhhhhhh....hhhhhhhhhhhhhhh........eeeeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ned A   1 TTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDICIYTNHFHTIEELSYKAEFHHH 187
                                    10        20        30        39        49        59       |75        85    || |94       104||     117     ||125       135       145 ||    157       167       177       187
                                                                38A                           67|              90| ||         105|           123|||                    147|                                     
                                                                                               74               92 ||          109            12A||                     150                                     
                                                                                                                 93A|                          12B|                                                             
                                                                                                                  93B                           124                                                             

Chain B from PDB  Type:PROTEIN  Length:181
 aligned with HSLV_ECOLI | P0A7B8 from UniProtKB/Swiss-Prot  Length:176

    Alignment length:181
                                                                                                                                                                                                        176      
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171    |    - 
           HSLV_ECOLI     2 TTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDICIYTNHFHTIEELSYKA------   -
               SCOP domains d1nedb_ B: HslV (ClpQ) protease                                                                                                                                                       SCOP domains
               CATH domains 1nedB00 B:1-188 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..eeeeee..eeee..eeeee....eeeehhh.eeeeee..hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.....hhh...eeeeee...eeeee...eee......eeee..hhhhhhhhhhhhhh....hhhhhhhhhhhhhhh........eeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ned B   1 TTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDICIYTNHFHTIEELSYKAEFHHHH 188
                                    10        20        30        39        49        59       |75        85    || |94       104||     117     ||125       135       145 ||    157       167       177       187 
                                                                38A                           67|              90| ||         105|           123|||                    147|                                      
                                                                                               74               92 ||          109            12A||                     150                                      
                                                                                                                 93A|                          12B|                                                              
                                                                                                                  93B                           124                                                              

Chain C from PDB  Type:PROTEIN  Length:181
 aligned with HSLV_ECOLI | P0A7B8 from UniProtKB/Swiss-Prot  Length:176

    Alignment length:181
                                                                                                                                                                                                        176      
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171    |    - 
           HSLV_ECOLI     2 TTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDICIYTNHFHTIEELSYKA------   -
               SCOP domains d1nedc_ C: HslV (ClpQ) protease                                                                                                                                                       SCOP domains
               CATH domains 1nedC00 C:1-188 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                            CATH domains
           Pfam domains (1) Proteasome-1nedC01 C:1-178                                                                                                                                                 ---------- Pfam domains (1)
           Pfam domains (2) Proteasome-1nedC02 C:1-178                                                                                                                                                 ---------- Pfam domains (2)
           Pfam domains (3) Proteasome-1nedC03 C:1-178                                                                                                                                                 ---------- Pfam domains (3)
         Sec.struct. author .eeeeeee..eeeeee..eeee..eeeee....eeeehhh.eeeeee..hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.....hhh...eeeeee...eeeee...eee......eeee..hhhhhhhhhhhhhh....hhhhhhhhhhhhhhh........eeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ned C   1 TTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDICIYTNHFHTIEELSYKAEFHHHH 188
                                    10        20        30        39        49        59       |75        85    || |94       104||     117     ||125       135       145 ||    157       167       177       187 
                                                                38A                           67|              90| ||         105|           123|||                    147|                                      
                                                                                               74               92 ||          109            12A||                     150                                      
                                                                                                                 93A|                          12B|                                                              
                                                                                                                  93B                           124                                                              

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 3)

Asymmetric Unit
(-)
Clan: NTN (93)

(-) Gene Ontology  (16, 16)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (HSLV_ECOLI | P0A7B8)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004298    threonine-type endopeptidase activity    Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0030163    protein catabolic process    The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0051603    proteolysis involved in cellular protein catabolic process    The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
    GO:0009408    response to heat    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
cellular component
    GO:0009376    HslUV protease complex    A protein complex that possesses ATP-dependent protease activity; consists of an ATPase large subunit with homology to other ClpX family ATPases and a peptidase small subunit related to the proteasomal beta-subunits of eukaryotes. In the E. coli complex, a double ring-shaped homohexamer of HslV is capped on each side by a ring-shaped HslU homohexamer.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005839    proteasome core complex    A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.

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 Related Entries

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        HSLV_ECOLI | P0A7B81e94 1g4a 1g4b 1hqy 1ht1 1ht2 4g4e 5ji3

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