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(-) Description

Title :  DBL AND PLECKSTRIN HOMOLOGY DOMAINS FROM HSOS1
 
Authors :  S. M. Soisson, J. Kuriyan
Date :  17 Dec 98  (Deposition) - 23 Dec 98  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Guanine Nucleotide Exchange Factor, Gene Regulation (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. M. Soisson, A. S. Nimnual, M. Uy, D. Bar-Sagi, J. Kuriyan
Crystal Structure Of The Dbl And Pleckstrin Homology Domains From The Human Son Of Sevenless Protein.
Cell(Cambridge, Mass. ) V. 95 259 1998
PubMed-ID: 9790532  |  Reference-DOI: 10.1016/S0092-8674(00)81756-0
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (HUMAN SOS 1)
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System StrainBL21
    Expression System Taxid511693
    FragmentDBL AND PLECKSTRIN HOMOLOGY DOMAINS
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymSON OF SEVENLESS PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric/Biological Unit (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1DBH)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1DBH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1DBH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (24, 24)

Asymmetric/Biological Unit (24, 24)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_066035I252TSOS1_HUMANDisease (NS4)142094234AI252T
02UniProtVAR_030424T266KSOS1_HUMANDisease (NS4)137852812AT266K
03UniProtVAR_030425M269RSOS1_HUMANDisease (NS4)137852813AM269R
04UniProtVAR_064504M269TSOS1_HUMANDisease (NS4)137852813AM269T
05UniProtVAR_030426D309YSOS1_HUMANDisease (NS4)397517180AD309Y
06UniProtVAR_030427Y337CSOS1_HUMANDisease (NS4)724160007AY337C
07UniProtVAR_066036T378ASOS1_HUMANPolymorphism397517146AT378A
08UniProtVAR_066037M422VSOS1_HUMANDisease (NS4)  ---AM422V
09UniProtVAR_066038E424KSOS1_HUMANDisease (NS4)730881041AE424K
10UniProtVAR_030428W432RSOS1_HUMANDisease (NS4)267607080AW432R
11UniProtVAR_030429E433KSOS1_HUMANDisease (NS4)397517147AE433K
12UniProtVAR_066041G434KSOS1_HUMANDisease (NS4)730881048AG434K
13UniProtVAR_030430G434RSOS1_HUMANDisease (NS4)397517148AG434R
14UniProtVAR_066042I437TSOS1_HUMANDisease (NS4)397517150AI437T
15UniProtVAR_030431C441YSOS1_HUMANDisease (NS4)727504295AC441Y
16UniProtVAR_064505Q477RSOS1_HUMANDisease (NS4)730881044AQ477R
17UniProtVAR_066043P478LSOS1_HUMANUnclassified  ---AP478L
18UniProtVAR_066044P478RSOS1_HUMANDisease (NS4)  ---AP478R
19UniProtVAR_066045G482RSOS1_HUMANDisease (NS4)  ---AG482R
20UniProtVAR_066046L490RSOS1_HUMANDisease (NS4)  ---AL490R
21UniProtVAR_064506R497QSOS1_HUMANDisease (NS4)371314838AR497Q
22UniProtVAR_030432S548RSOS1_HUMANDisease (NS4)397517149AS548R
23UniProtVAR_066047T549KSOS1_HUMANDisease (NS4)730881046AT549K
24UniProtVAR_030433L550PSOS1_HUMANDisease (NS4)397517153AL550P

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 2)

Asymmetric/Biological Unit (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DH_2PS50010 Dbl homology (DH) domain profile.SOS1_HUMAN200-390  1A:200-390
2PH_DOMAINPS50003 PH domain profile.SOS1_HUMAN443-546  1A:443-546

(-) Exons   (0, 0)

(no "Exon" information available for 1DBH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:340
 aligned with SOS1_HUMAN | Q07889 from UniProtKB/Swiss-Prot  Length:1333

    Alignment length:353
                                   207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547   
           SOS1_HUMAN   198 EQTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSEDQEDKECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDIGQCCNEFIMEGTLTRVGAKHERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYRSTL 550
               SCOP domains d1dbha1 A:198-404 Son of sevenless-1 (sos-1)                                                                                                                                                                   -------------d1dbha2 A:418-550 Son of sevenless-1 (sos-1)                                                                                          SCOP domains
               CATH domains 1dbhA01 A:198-421 Dbl Homology Domain; Chain A                                                                                                                                                                                  -1dbhA02 A:423-550 Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhh...hhhhh......hhhhhhhh..hhhhhhhhhhhhhhhhhhh............hhhhhhhhhh...hhhhhhhhhh....hhhhhhhhhh...hhhhhhhh...hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh..-------------.hhhhhh.hhh........hhh........eee........eee........eeee..............eeeee.......eeee.........eeee.......eeee...hhhhhhhhhhhhhhh..... Sec.struct. author
             SAPs(SNPs) (1) ------------------------------------------------------T-------------K--R---------------------------------------Y---------------------------C----------------------------------------A-------------------------------------------V-K-------RKK--T---Y-----------------------------------RL---R-------R------Q--------------------------------------------------RKP SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------R-------------------------------------------R------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE --DH_2  PDB: A:200-390 UniProt: 200-390                                                                                                                                                          ----------------------------------------------------PH_DOMAIN  PDB: A:443-546 UniProt: 443-546                                                              ---- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1dbh A 198 EQTYYDLVKAFmAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVEmTDEGSPHPLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSEDQEDKECLKQAITALLNVQSGmEKICSKSLAKRRLSESA-------------AIKKmNEIQKNIDGWEGKDIGQCCNEFImEGTLTRVGAKHERHIFLFDGLmICCKSNHGQPRLPGASNAEYRLKEKFFmRKVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWmAALISLQYRSTL 550
                                   207 |     217       227       237       247       257       267 |     277       287       297       307       317       327       337       347       357       367       377       387       397      |  -         -|   |  427       437       447       457       467|      477       487       497       507       517       527       537|      547   
                                     209-MSE                                                     269-MSE                                                                                                               387-MSE          404           418   |                     446-MSE               468-MSE                     496-MSE                                   538-MSE        
                                                                                                                                                                                                                                                          422-MSE                                                                                                                            

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1DBH)

(-) Gene Ontology  (46, 46)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (SOS1_HUMAN | Q07889)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0005096    GTPase activator activity    Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP.
    GO:0005088    Ras guanyl-nucleotide exchange factor activity    Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Ras superfamily. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
    GO:0005089    Rho guanyl-nucleotide exchange factor activity    Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
    GO:0017124    SH3 domain binding    Interacting selectively and non-covalently with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins.
    GO:0005085    guanyl-nucleotide exchange factor activity    Stimulates the exchange of guanyl nucleotides associated with a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046982    protein heterodimerization activity    Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
biological process
    GO:0001782    B cell homeostasis    The process of regulating the proliferation and elimination of B cells such that the total number of B cells within a whole or part of an organism is stable over time in the absence of an outside stimulus.
    GO:0038128    ERBB2 signaling pathway    A series of molecular signals initiated by binding of a ligand to a member of the ERBB family of receptors on the surface of a cell, where the signal is transmitted by ERBB2. The pathway ends with regulation of a downstream cellular process, e.g. transcription. ERBB2 receptors are themselves unable to bind to ligands, but act as a signal-amplifying tyrosine kinase within a heterodimeric pair.
    GO:0038095    Fc-epsilon receptor signaling pathway    A series of molecular signals initiated by the binding of the Fc portion of immunoglobulin E (IgE) to an Fc-epsilon receptor on the surface of a signal-receiving cell, and ending with regulation of a downstream cellular process, e.g. transcription. The Fc portion of an immunoglobulin is its C-terminal constant region.
    GO:0000165    MAPK cascade    An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP Kinase-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell.
    GO:0007265    Ras protein signal transduction    A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state.
    GO:0007411    axon guidance    The chemotaxis process that directs the migration of an axon growth cone to a specific target site in response to a combination of attractive and repulsive cues.
    GO:0048514    blood vessel morphogenesis    The process in which the anatomical structures of blood vessels are generated and organized. The blood vessel is the vasculature carrying blood.
    GO:0003209    cardiac atrium morphogenesis    The process in which the cardiac atrium is generated and organized. A cardiac atrium receives blood from a vein and pumps it to a cardiac ventricle.
    GO:0007173    epidermal growth factor receptor signaling pathway    A series of molecular signals initiated by binding of a ligand to the tyrosine kinase receptor EGFR (ERBB1) on the surface of a cell. The pathway ends with regulation of a downstream cellular process, e.g. transcription.
    GO:0061029    eyelid development in camera-type eye    The progression of the eyelid in a camera-type eye from its formation to the mature state. The eyelid is a membranous cover that helps protect and lubricate the eye.
    GO:0001942    hair follicle development    The process whose specific outcome is the progression of the hair follicle over time, from its formation to the mature structure. A hair follicle is a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open.
    GO:0003007    heart morphogenesis    The developmental process in which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood.
    GO:0061384    heart trabecula morphogenesis    The process of shaping a trabecula in the heart. A trabecula is a small, often microscopic, tissue element in the form of a small beam, strut or rod, which generally has a mechanical function. Trabecula are usually but not necessarily, composed of dense collagenous tissue.
    GO:0008286    insulin receptor signaling pathway    The series of molecular signals generated as a consequence of the insulin receptor binding to insulin.
    GO:0050900    leukocyte migration    The movement of a leukocyte within or between different tissues and organs of the body.
    GO:0002260    lymphocyte homeostasis    The process of regulating the proliferation and elimination of lymphocytes such that the total number of lymphocytes within a whole or part of an organism is stable over time in the absence of an outside stimulus.
    GO:1904693    midbrain morphogenesis    The developmental process by which a midbrain is generated and organized.
    GO:0035264    multicellular organism growth    The increase in size or mass of an entire multicellular organism, as opposed to cell growth.
    GO:0048011    neurotrophin TRK receptor signaling pathway    A series of molecular signals initiated by the binding of a neurotrophin to a receptor on the surface of the target cell where the receptor possesses tyrosine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0060021    palate development    The biological process whose specific outcome is the progression of the palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The palate is the partition that separates the nasal and oral cavities.
    GO:0003344    pericardium morphogenesis    The process in which the anatomical structure of the pericardium is generated and organized.
    GO:0043547    positive regulation of GTPase activity    Any process that activates or increases the activity of a GTPase.
    GO:0043065    positive regulation of apoptotic process    Any process that activates or increases the frequency, rate or extent of cell death by apoptotic process.
    GO:0045742    positive regulation of epidermal growth factor receptor signaling pathway    Any process that activates or increases the frequency, rate or extent of epidermal growth factor receptor signaling pathway activity.
    GO:0051057    positive regulation of small GTPase mediated signal transduction    Any process that activates or increases the frequency, rate or extent of small GTPase mediated signal transduction.
    GO:0035023    regulation of Rho protein signal transduction    Any process that modulates the frequency, rate or extent of Rho protein signal transduction.
    GO:0033081    regulation of T cell differentiation in thymus    Any process that modulates the frequency, rate or extent of T cell differentiation in the thymus.
    GO:0042129    regulation of T cell proliferation    Any process that modulates the frequency, rate or extent of T cell proliferation.
    GO:2000973    regulation of pro-B cell differentiation    Any process that modulates the frequency, rate or extent of pro-B cell differentiation.
    GO:0051056    regulation of small GTPase mediated signal transduction    Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0007264    small GTPase mediated signal transduction    Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
    GO:0007296    vitellogenesis    The production of yolk. Yolk is a mixture of materials used for embryonic nutrition.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0043025    neuronal cell body    The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0014069    postsynaptic density of dendrite    An electron dense network of proteins within and adjacent to the postsynaptic membrane of the dendrite of asymetric synapses. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SOS1_HUMAN | Q078891awe 1bkd 1nvu 1nvv 1nvw 1nvx 1q9c 1xd2 1xd4 1xdv 2ii0 3ksy 4nyi 4nyj 4nym 4uru 4urv 4urw 4urx 4ury 4urz 4us0 4us1 4us2

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