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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HISTONE DOMAIN OF SON OF SEVENLESS
 
Authors :  H. Sondermann, S. M. Soisson, D. Bar-Sagi, J. Kuriyan
Date :  24 Aug 03  (Deposition) - 09 Dec 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.21
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Biol. Unit 9:  I  (1x)
Keywords :  Histone Fold, H2A, H2B, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  H. Sondermann, S. M. Soisson, D. Bar-Sagi, J. Kuriyan
Tandem Histone Folds In The Structure Of The N-Terminal Segment Of The Ras Activator Son Of Sevenless
Structure V. 11 1583 2003
PubMed-ID: 14656442  |  Reference-DOI: 10.1016/J.STR.2003.10.015
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SON OF SEVENLESS PROTEIN
    ChainsA, B, C, D, E, F, G, H, I
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPPROEXHTB
    Expression System StrainB834(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentN-TERMINAL HISTONE DOMAIN
    GeneSOS1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymSOS-1

 Structural Features

(-) Chains, Units

  123456789
Asymmetric Unit ABCDEFGHI
Biological Unit 1 (1x)A        
Biological Unit 2 (1x) B       
Biological Unit 3 (1x)  C      
Biological Unit 4 (1x)   D     
Biological Unit 5 (1x)    E    
Biological Unit 6 (1x)     F   
Biological Unit 7 (1x)      G  
Biological Unit 8 (1x)       H 
Biological Unit 9 (1x)        I

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 36)

Asymmetric Unit (1, 36)
No.NameCountTypeFull Name
1MSE36Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 5 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 6 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 7 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 8 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 9 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1Q9C)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1Q9C)

(-) Cis Peptide Bonds  (9, 9)

Asymmetric Unit
No.Residues
1His A:80 -Pro A:81
2His B:80 -Pro B:81
3His C:80 -Pro C:81
4His D:80 -Pro D:81
5His E:80 -Pro E:81
6His F:80 -Pro F:81
7His G:80 -Pro G:81
8His H:80 -Pro H:81
9His I:80 -Pro I:81

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (5, 43)

Asymmetric Unit (5, 43)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_066031T37ASOS1_HUMANPolymorphism150565592A/B/C/D/E/F/G/H/IT37A
2UniProtVAR_066032P102RSOS1_HUMANDisease (NS4)  ---B/C/D/E/F/G/IP102R
3UniProtVAR_030423E108KSOS1_HUMANDisease (NS4)397517164A/B/C/D/E/F/G/H/IE108K
4UniProtVAR_066033P112RSOS1_HUMANDisease (NS4)397517166A/B/C/D/E/F/G/H/IP112R
5UniProtVAR_066034K170ESOS1_HUMANDisease (NS4)397517172A/B/C/D/E/F/G/H/IK170E

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (4, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_066031T37ASOS1_HUMANPolymorphism150565592AT37A
3UniProtVAR_030423E108KSOS1_HUMANDisease (NS4)397517164AE108K
4UniProtVAR_066033P112RSOS1_HUMANDisease (NS4)397517166AP112R
5UniProtVAR_066034K170ESOS1_HUMANDisease (NS4)397517172AK170E

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (5, 5)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_066031T37ASOS1_HUMANPolymorphism150565592BT37A
2UniProtVAR_066032P102RSOS1_HUMANDisease (NS4)  ---BP102R
3UniProtVAR_030423E108KSOS1_HUMANDisease (NS4)397517164BE108K
4UniProtVAR_066033P112RSOS1_HUMANDisease (NS4)397517166BP112R
5UniProtVAR_066034K170ESOS1_HUMANDisease (NS4)397517172BK170E

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (5, 5)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_066031T37ASOS1_HUMANPolymorphism150565592CT37A
2UniProtVAR_066032P102RSOS1_HUMANDisease (NS4)  ---CP102R
3UniProtVAR_030423E108KSOS1_HUMANDisease (NS4)397517164CE108K
4UniProtVAR_066033P112RSOS1_HUMANDisease (NS4)397517166CP112R
5UniProtVAR_066034K170ESOS1_HUMANDisease (NS4)397517172CK170E

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 4 (5, 5)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_066031T37ASOS1_HUMANPolymorphism150565592DT37A
2UniProtVAR_066032P102RSOS1_HUMANDisease (NS4)  ---DP102R
3UniProtVAR_030423E108KSOS1_HUMANDisease (NS4)397517164DE108K
4UniProtVAR_066033P112RSOS1_HUMANDisease (NS4)397517166DP112R
5UniProtVAR_066034K170ESOS1_HUMANDisease (NS4)397517172DK170E

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 5 (5, 5)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_066031T37ASOS1_HUMANPolymorphism150565592ET37A
2UniProtVAR_066032P102RSOS1_HUMANDisease (NS4)  ---EP102R
3UniProtVAR_030423E108KSOS1_HUMANDisease (NS4)397517164EE108K
4UniProtVAR_066033P112RSOS1_HUMANDisease (NS4)397517166EP112R
5UniProtVAR_066034K170ESOS1_HUMANDisease (NS4)397517172EK170E

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 6 (5, 5)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_066031T37ASOS1_HUMANPolymorphism150565592FT37A
2UniProtVAR_066032P102RSOS1_HUMANDisease (NS4)  ---FP102R
3UniProtVAR_030423E108KSOS1_HUMANDisease (NS4)397517164FE108K
4UniProtVAR_066033P112RSOS1_HUMANDisease (NS4)397517166FP112R
5UniProtVAR_066034K170ESOS1_HUMANDisease (NS4)397517172FK170E

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 7 (5, 5)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_066031T37ASOS1_HUMANPolymorphism150565592GT37A
2UniProtVAR_066032P102RSOS1_HUMANDisease (NS4)  ---GP102R
3UniProtVAR_030423E108KSOS1_HUMANDisease (NS4)397517164GE108K
4UniProtVAR_066033P112RSOS1_HUMANDisease (NS4)397517166GP112R
5UniProtVAR_066034K170ESOS1_HUMANDisease (NS4)397517172GK170E

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 8 (4, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_066031T37ASOS1_HUMANPolymorphism150565592HT37A
3UniProtVAR_030423E108KSOS1_HUMANDisease (NS4)397517164HE108K
4UniProtVAR_066033P112RSOS1_HUMANDisease (NS4)397517166HP112R
5UniProtVAR_066034K170ESOS1_HUMANDisease (NS4)397517172HK170E

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 9 (5, 5)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_066031T37ASOS1_HUMANPolymorphism150565592IT37A
2UniProtVAR_066032P102RSOS1_HUMANDisease (NS4)  ---IP102R
3UniProtVAR_030423E108KSOS1_HUMANDisease (NS4)397517164IE108K
4UniProtVAR_066033P112RSOS1_HUMANDisease (NS4)397517166IP112R
5UniProtVAR_066034K170ESOS1_HUMANDisease (NS4)397517172IK170E

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1Q9C)

(-) Exons   (0, 0)

(no "Exon" information available for 1Q9C)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:164
 aligned with SOS1_HUMAN | Q07889 from UniProtKB/Swiss-Prot  Length:1333

    Alignment length:172
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175  
           SOS1_HUMAN     6 LPYEFFSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQAQPRSASDVEERVQKSFPHPIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVLMDMFH 177
               SCOP domains d1q9ca_ A: Histone domain of Son of sevenless protein                                                                                                                        SCOP domains
               CATH domains ---------1q9cA01 A:15-169 Histone, subunit A                                                                                                                        -------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh...hhhhhhhhhhhhhhh--------..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------A----------------------------------------------------------------------K---R---------------------------------------------------------E------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1q9c A   6 LPYEFFSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNmLCQAQPRSASDVEERVQKSFPHPIDKWAIADAQSAIE--------SLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDIKVAmCADKVLmDmFH 177
                                    15        25        35        45        55  |     65        75        85        95       105       115       125       135       145       155       165|      175  
                                                                               58-MSE                               95      104                                                           166-MSE  | |  
                                                                                                                                                                                                 173-MSE
                                                                                                                                                                                                   175-MSE

Chain B from PDB  Type:PROTEIN  Length:172
 aligned with SOS1_HUMAN | Q07889 from UniProtKB/Swiss-Prot  Length:1333

    Alignment length:172
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176  
           SOS1_HUMAN     7 PYEFFSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQAQPRSASDVEERVQKSFPHPIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVLMDMFHQ 178
               SCOP domains d1q9cb_ B: Histone domain of Son of sevenless protein                                                                                                                        SCOP domains
               CATH domains --------1q9cB01 B:15-169 Histone, subunit A                                                                                                                        --------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhh..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhhh...........hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------A----------------------------------------------------------------R-----K---R---------------------------------------------------------E-------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1q9c B   7 PYEFFSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNmLCQAQPRSASDVEERVQKSFPHPIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDIKVAmCADKVLmDmFHQ 178
                                    16        26        36        46        56 |      66        76        86        96       106       116       126       136       146       156       166      |176  
                                                                              58-MSE                                                                                                     166-MSE  | |   
                                                                                                                                                                                                173-MSE 
                                                                                                                                                                                                  175-MSE

Chain C from PDB  Type:PROTEIN  Length:162
 aligned with SOS1_HUMAN | Q07889 from UniProtKB/Swiss-Prot  Length:1333

    Alignment length:168
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169        
           SOS1_HUMAN    10 FFSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQAQPRSASDVEERVQKSFPHPIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVLMDMFH 177
               SCOP domains d1q9cc_ C: Histone domain of Son of sevenless protein                                                                                                                    SCOP domains
               CATH domains -----1q9cC01 C:15-169 Histone, subunit A                                                                                                                        -------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhh..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhh....------....hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------A----------------------------------------------------------------R-----K---R---------------------------------------------------------E------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1q9c C  10 FFSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNmLCQAQPRSASDVEERVQKSFPHPIDKWAIADAQSAIE------PLSLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDIKVAmCADKVLmDmFH 177
                                    19        29        39        49        59        69        79        89     |   -  |    109       119       129       139       149       159      |169   | |  
                                                                           58-MSE                               95    102                                                             166-MSE  | |  
                                                                                                                                                                                             173-MSE
                                                                                                                                                                                               175-MSE

Chain D from PDB  Type:PROTEIN  Length:178
 aligned with SOS1_HUMAN | Q07889 from UniProtKB/Swiss-Prot  Length:1333

    Alignment length:178
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175        
           SOS1_HUMAN     6 LPYEFFSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQAQPRSASDVEERVQKSFPHPIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVLMDMFHQDVEDI 183
               SCOP domains d1q9cd_ D: Histone domain of Son of sevenless protein                                                                                                                              SCOP domains
               CATH domains ---------1q9cD01 D:15-169 Histone, subunit A                                                                                                                        -------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhhh...........hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------A----------------------------------------------------------------R-----K---R---------------------------------------------------------E------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1q9c D   6 LPYEFFSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNmLCQAQPRSASDVEERVQKSFPHPIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDIKVAmCADKVLmDmFHQDVEDI 183
                                    15        25        35        45        55  |     65        75        85        95       105       115       125       135       145       155       165|      175        
                                                                               58-MSE                                                                                                     166-MSE  | |        
                                                                                                                                                                                                 173-MSE      
                                                                                                                                                                                                   175-MSE    

Chain E from PDB  Type:PROTEIN  Length:176
 aligned with SOS1_HUMAN | Q07889 from UniProtKB/Swiss-Prot  Length:1333

    Alignment length:178
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175        
           SOS1_HUMAN     6 LPYEFFSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQAQPRSASDVEERVQKSFPHPIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVLMDMFHQDVEDI 183
               SCOP domains d1q9ce_ E: Histone domain of Son of sevenless protein                                                                                                                              SCOP domains
               CATH domains ---------1q9cE01 E:15-169 Histone, subunit A                                                                                                                        -------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhh..--.......hhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------A----------------------------------------------------------------R-----K---R---------------------------------------------------------E------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1q9c E   6 LPYEFFSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNmLCQAQPRSASDVEERVQKSFPHPIDKWAIADAQSAIEK--RRNPLSLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDIKVAmCADKVLmDmFHQDVEDI 183
                                    15        25        35        45        55  |     65        75        85        95|  |   105       115       125       135       145       155       165|      175        
                                                                               58-MSE                                96 99                                                                166-MSE  | |        
                                                                                                                                                                                                 173-MSE      
                                                                                                                                                                                                   175-MSE    

Chain F from PDB  Type:PROTEIN  Length:174
 aligned with SOS1_HUMAN | Q07889 from UniProtKB/Swiss-Prot  Length:1333

    Alignment length:178
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175        
           SOS1_HUMAN     6 LPYEFFSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQAQPRSASDVEERVQKSFPHPIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVLMDMFHQDVEDI 183
               SCOP domains d1q9cf_ F: Histone domain of Son of sevenless protein                                                                                                                              SCOP domains
               CATH domains ---------1q9cF01 F:15-169 Histone, subunit A                                                                                                                        -------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh..hhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhh.....----....hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------A----------------------------------------------------------------R-----K---R---------------------------------------------------------E------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1q9c F   6 LPYEFFSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNmLCQAQPRSASDVEERVQKSFPHPIDKWAIADAQSAIEKR----PLSLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDIKVAmCADKVLmDmFHQDVEDI 183
                                    15        25        35        45        55  |     65        75        85        95 |    |105       115       125       135       145       155       165|      175        
                                                                               58-MSE                                 97  102                                                             166-MSE  | |        
                                                                                                                                                                                                 173-MSE      
                                                                                                                                                                                                   175-MSE    

Chain G from PDB  Type:PROTEIN  Length:174
 aligned with SOS1_HUMAN | Q07889 from UniProtKB/Swiss-Prot  Length:1333

    Alignment length:174
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175    
           SOS1_HUMAN     6 LPYEFFSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQAQPRSASDVEERVQKSFPHPIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVLMDMFHQD 179
               SCOP domains d1q9cg_ G: Histone domain of Son of sevenless protein                                                                                                                          SCOP domains
               CATH domains ---------1q9cG01 G:15-169 Histone, subunit A                                                                                                                        ---------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........hhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhhh...........hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------A----------------------------------------------------------------R-----K---R---------------------------------------------------------E--------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1q9c G   6 LPYEFFSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNmLCQAQPRSASDVEERVQKSFPHPIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDIKVAmCADKVLmDmFHQD 179
                                    15        25        35        45        55  |     65        75        85        95       105       115       125       135       145       155       165|      175    
                                                                               58-MSE                                                                                                     166-MSE  | |    
                                                                                                                                                                                                 173-MSE  
                                                                                                                                                                                                   175-MSE

Chain H from PDB  Type:PROTEIN  Length:175
 aligned with SOS1_HUMAN | Q07889 from UniProtKB/Swiss-Prot  Length:1333

    Alignment length:178
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175        
           SOS1_HUMAN     6 LPYEFFSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQAQPRSASDVEERVQKSFPHPIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVLMDMFHQDVEDI 183
               SCOP domains d1q9ch_ H: Histone domain of Son of sevenless protein                                                                                                                              SCOP domains
               CATH domains ---------1q9cH01 H:15-169 Histone, subunit A                                                                                                                        -------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhh...hhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhh....---...hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------A----------------------------------------------------------------------K---R---------------------------------------------------------E------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1q9c H   6 LPYEFFSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNmLCQAQPRSASDVEERVQKSFPHPIDKWAIADAQSAIEKRKR---LSLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDIKVAmCADKVLmDmFHQDVEDI 183
                                    15        25        35        45        55  |     65        75        85        95   |   105       115       125       135       145       155       165|      175        
                                                                               58-MSE                                   99 103                                                            166-MSE  | |        
                                                                                                                                                                                                 173-MSE      
                                                                                                                                                                                                   175-MSE    

Chain I from PDB  Type:PROTEIN  Length:178
 aligned with SOS1_HUMAN | Q07889 from UniProtKB/Swiss-Prot  Length:1333

    Alignment length:178
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175        
           SOS1_HUMAN     6 LPYEFFSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNMLCQAQPRSASDVEERVQKSFPHPIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVLMDMFHQDVEDI 183
               SCOP domains d1q9ci_ I: Histone domain of Son of sevenless protein                                                                                                                              SCOP domains
               CATH domains ---------1q9cI01 I:15-169 Histone, subunit A                                                                                                                        -------------- CATH domains
           Pfam domains (1) -------------------------------------------------------------------------------------------Histone-1q9cI01 I:97-169                                                 -------------- Pfam domains (1)
           Pfam domains (2) -------------------------------------------------------------------------------------------Histone-1q9cI02 I:97-169                                                 -------------- Pfam domains (2)
           Pfam domains (3) -------------------------------------------------------------------------------------------Histone-1q9cI03 I:97-169                                                 -------------- Pfam domains (3)
           Pfam domains (4) -------------------------------------------------------------------------------------------Histone-1q9cI04 I:97-169                                                 -------------- Pfam domains (4)
           Pfam domains (5) -------------------------------------------------------------------------------------------Histone-1q9cI05 I:97-169                                                 -------------- Pfam domains (5)
           Pfam domains (6) -------------------------------------------------------------------------------------------Histone-1q9cI06 I:97-169                                                 -------------- Pfam domains (6)
           Pfam domains (7) -------------------------------------------------------------------------------------------Histone-1q9cI07 I:97-169                                                 -------------- Pfam domains (7)
           Pfam domains (8) -------------------------------------------------------------------------------------------Histone-1q9cI08 I:97-169                                                 -------------- Pfam domains (8)
           Pfam domains (9) -------------------------------------------------------------------------------------------Histone-1q9cI09 I:97-169                                                 -------------- Pfam domains (9)
         Sec.struct. author .........hhhhhh..hhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------A----------------------------------------------------------------R-----K---R---------------------------------------------------------E------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1q9c I   6 LPYEFFSEENAPKWRGLLVPALKKVQGQVHPTLESNDDALQYVEELILQLLNmLCQAQPRSASDVEERVQKSFPHPIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDIKVAmCADKVLmDmFHQDVEDI 183
                                    15        25        35        45        55  |     65        75        85        95       105       115       125       135       145       155       165|      175        
                                                                               58-MSE                                                                                                     166-MSE  | |        
                                                                                                                                                                                                 173-MSE      
                                                                                                                                                                                                   175-MSE    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 9)

Asymmetric Unit

(-) CATH Domains  (1, 9)

Asymmetric Unit
1a1q9cA01A:15-169
1b1q9cC01C:15-169
1c1q9cF01F:15-169
1d1q9cH01H:15-169
1e1q9cE01E:15-169
1f1q9cB01B:15-169
1g1q9cD01D:15-169
1h1q9cG01G:15-169
1i1q9cI01I:15-169

(-) Pfam Domains  (1, 9)

Asymmetric Unit
(-)
Clan: Histone (49)
1aHistone-1q9cI01I:97-169
1bHistone-1q9cI02I:97-169
1cHistone-1q9cI03I:97-169
1dHistone-1q9cI04I:97-169
1eHistone-1q9cI05I:97-169
1fHistone-1q9cI06I:97-169
1gHistone-1q9cI07I:97-169
1hHistone-1q9cI08I:97-169
1iHistone-1q9cI09I:97-169

(-) Gene Ontology  (46, 46)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I   (SOS1_HUMAN | Q07889)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0005096    GTPase activator activity    Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP.
    GO:0005088    Ras guanyl-nucleotide exchange factor activity    Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Ras superfamily. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
    GO:0005089    Rho guanyl-nucleotide exchange factor activity    Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
    GO:0017124    SH3 domain binding    Interacting selectively and non-covalently with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins.
    GO:0005085    guanyl-nucleotide exchange factor activity    Stimulates the exchange of guanyl nucleotides associated with a GTPase. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046982    protein heterodimerization activity    Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
biological process
    GO:0001782    B cell homeostasis    The process of regulating the proliferation and elimination of B cells such that the total number of B cells within a whole or part of an organism is stable over time in the absence of an outside stimulus.
    GO:0038128    ERBB2 signaling pathway    A series of molecular signals initiated by binding of a ligand to a member of the ERBB family of receptors on the surface of a cell, where the signal is transmitted by ERBB2. The pathway ends with regulation of a downstream cellular process, e.g. transcription. ERBB2 receptors are themselves unable to bind to ligands, but act as a signal-amplifying tyrosine kinase within a heterodimeric pair.
    GO:0038095    Fc-epsilon receptor signaling pathway    A series of molecular signals initiated by the binding of the Fc portion of immunoglobulin E (IgE) to an Fc-epsilon receptor on the surface of a signal-receiving cell, and ending with regulation of a downstream cellular process, e.g. transcription. The Fc portion of an immunoglobulin is its C-terminal constant region.
    GO:0000165    MAPK cascade    An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP Kinase-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell.
    GO:0007265    Ras protein signal transduction    A series of molecular signals within the cell that are mediated by a member of the Ras superfamily of proteins switching to a GTP-bound active state.
    GO:0007411    axon guidance    The chemotaxis process that directs the migration of an axon growth cone to a specific target site in response to a combination of attractive and repulsive cues.
    GO:0048514    blood vessel morphogenesis    The process in which the anatomical structures of blood vessels are generated and organized. The blood vessel is the vasculature carrying blood.
    GO:0003209    cardiac atrium morphogenesis    The process in which the cardiac atrium is generated and organized. A cardiac atrium receives blood from a vein and pumps it to a cardiac ventricle.
    GO:0007173    epidermal growth factor receptor signaling pathway    A series of molecular signals initiated by binding of a ligand to the tyrosine kinase receptor EGFR (ERBB1) on the surface of a cell. The pathway ends with regulation of a downstream cellular process, e.g. transcription.
    GO:0061029    eyelid development in camera-type eye    The progression of the eyelid in a camera-type eye from its formation to the mature state. The eyelid is a membranous cover that helps protect and lubricate the eye.
    GO:0001942    hair follicle development    The process whose specific outcome is the progression of the hair follicle over time, from its formation to the mature structure. A hair follicle is a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open.
    GO:0003007    heart morphogenesis    The developmental process in which the heart is generated and organized. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood.
    GO:0061384    heart trabecula morphogenesis    The process of shaping a trabecula in the heart. A trabecula is a small, often microscopic, tissue element in the form of a small beam, strut or rod, which generally has a mechanical function. Trabecula are usually but not necessarily, composed of dense collagenous tissue.
    GO:0008286    insulin receptor signaling pathway    The series of molecular signals generated as a consequence of the insulin receptor binding to insulin.
    GO:0050900    leukocyte migration    The movement of a leukocyte within or between different tissues and organs of the body.
    GO:0002260    lymphocyte homeostasis    The process of regulating the proliferation and elimination of lymphocytes such that the total number of lymphocytes within a whole or part of an organism is stable over time in the absence of an outside stimulus.
    GO:1904693    midbrain morphogenesis    The developmental process by which a midbrain is generated and organized.
    GO:0035264    multicellular organism growth    The increase in size or mass of an entire multicellular organism, as opposed to cell growth.
    GO:0048011    neurotrophin TRK receptor signaling pathway    A series of molecular signals initiated by the binding of a neurotrophin to a receptor on the surface of the target cell where the receptor possesses tyrosine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0060021    palate development    The biological process whose specific outcome is the progression of the palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The palate is the partition that separates the nasal and oral cavities.
    GO:0003344    pericardium morphogenesis    The process in which the anatomical structure of the pericardium is generated and organized.
    GO:0043547    positive regulation of GTPase activity    Any process that activates or increases the activity of a GTPase.
    GO:0043065    positive regulation of apoptotic process    Any process that activates or increases the frequency, rate or extent of cell death by apoptotic process.
    GO:0045742    positive regulation of epidermal growth factor receptor signaling pathway    Any process that activates or increases the frequency, rate or extent of epidermal growth factor receptor signaling pathway activity.
    GO:0051057    positive regulation of small GTPase mediated signal transduction    Any process that activates or increases the frequency, rate or extent of small GTPase mediated signal transduction.
    GO:0035023    regulation of Rho protein signal transduction    Any process that modulates the frequency, rate or extent of Rho protein signal transduction.
    GO:0033081    regulation of T cell differentiation in thymus    Any process that modulates the frequency, rate or extent of T cell differentiation in the thymus.
    GO:0042129    regulation of T cell proliferation    Any process that modulates the frequency, rate or extent of T cell proliferation.
    GO:2000973    regulation of pro-B cell differentiation    Any process that modulates the frequency, rate or extent of pro-B cell differentiation.
    GO:0051056    regulation of small GTPase mediated signal transduction    Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0007264    small GTPase mediated signal transduction    Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
    GO:0007296    vitellogenesis    The production of yolk. Yolk is a mixture of materials used for embryonic nutrition.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0043025    neuronal cell body    The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0014069    postsynaptic density of dendrite    An electron dense network of proteins within and adjacent to the postsynaptic membrane of the dendrite of asymetric synapses. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SOS1_HUMAN | Q078891awe 1bkd 1dbh 1nvu 1nvv 1nvw 1nvx 1xd2 1xd4 1xdv 2ii0 3ksy 4nyi 4nyj 4nym 4uru 4urv 4urw 4urx 4ury 4urz 4us0 4us1 4us2

(-) Related Entries Specified in the PDB File

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