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(-) Description

Title :  THE CRYSTAL STRUCTURE OF H-RAS AND SOS IN COMPLEX WITH LIGANDS
 
Authors :  J. J. G. Winter, M. Anderson, K. Blades, C. Brassington, A. L. Breeze, C. K. Embrey, G. Fairley, P. Faulder, M. R. V. Finlay, J. G. Kettle, T. Nowa R. Overman, S. J. Patel, P. Perkins, L. Spadola, J. Tart, J. Tucker, G. W
Date :  02 Jul 14  (Deposition) - 04 Mar 15  (Release) - 25 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.58
Chains :  Asym./Biol. Unit :  R,S
Keywords :  Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Winter, M. Anderson, K. Blades, C. Chresta, K. J. Embrey, G. Fairley P. Faulder, M. R. V. Finlay, J. G. Kettle, T. Nowak, R. Overman, S. J. Patel, P. Perkins, L. Spadola, J. Tart, J. A. Tucker, G. Wrigley
Small Molecule Binding Sites On The Ras:Sos Complex Can Be Exploited For Inhibition Of Ras Activation.
J. Med. Chem. V. 58 2265 2015
PubMed-ID: 25695162  |  Reference-DOI: 10.1021/JM501660T

(-) Compounds

Molecule 1 - GTPASE HRAS
    ChainsR
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentUNP RESIDUES 1-166
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymH-RAS-1, HA-RAS, TRANSFORMING PROTEIN P21, C-H-RAS, P21RAS, H-RAS
 
Molecule 2 - SON OF SEVENLESS HOMOLOG 1
    ChainsS
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentUNP RESIDUES 564-1049
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymSOS-1, SON OF SEVENLESS-1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit RS

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1FMT2Ligand/IonFORMIC ACID
2UMK1Ligand/Ion4-(4-BROMOPHENYL)PIPERIDIN-4-OL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN S:879 , TYR S:884 , UMK S:2047BINDING SITE FOR RESIDUE FMT S2046
2AC2SOFTWAREGLN R:99BINDING SITE FOR RESIDUE FMT R1167
3AC3SOFTWAREMET S:878 , ASN S:879 , TYR S:884 , ASP S:887 , PHE S:890 , FMT S:2046BINDING SITE FOR RESIDUE UMK S2047

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4URV)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Pro S:924 -Pro S:925
2Asn S:1020 -Pro S:1021

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4URV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4URV)

(-) Exons   (0, 0)

(no "Exon" information available for 4URV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain R from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                        
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee......hhhhhhhhh..........hhhh.eeeeee..eeeeeeeee......hhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhhhhhhhh.....eeeeeee........hhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4urv R    0 HMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH  166
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       

Chain S from PDB  Type:PROTEIN  Length:451
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhh......eeeeeee......eeeeeehhhhhhhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh...............hhhhh.....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh...eeee..eeeeehhhhhhhhhhhhhhhhh.........hhhhhhhhhh.......hhhhhhhhhhhhhhhhh............................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4urv S  568 RLPSADVYRFAEPDSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLIIERFEIPEPLSAELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESITKIIQRKKIAQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKYSYPLKSPGVRPSNP 1045
                                   577       587       597       607       617       627       637       647     ||673       683       693       703       713       723       733       743|      764       774       784       794       804       814       824       834       844       854       864       874       884       894       904       914       924       934       944       954       964       974       984       994      1004      1014      1024      1034      1044 
                                                                                                               653|                                                                      743|                                                                                                                                                                                                                                                                                                  
                                                                                                                670                                                                       755                                                                                                                                                                                                                                                                                                  

   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4URV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4URV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4URV)

(-) Gene Ontology  (97, 110)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RASH_HUMAN | P01112121p 1aa9 1agp 1bkd 1clu 1crp 1crq 1crr 1ctq 1gnp 1gnq 1gnr 1he8 1iaq 1ioz 1jah 1jai 1k8r 1lf0 1lf5 1lfd 1nvu 1nvv 1nvw 1nvx 1p2s 1p2t 1p2u 1p2v 1plj 1plk 1pll 1q21 1qra 1rvd 1wq1 1xcm 1xd2 1xj0 1zvq 1zw6 221p 2c5l 2ce2 2cl0 2cl6 2cl7 2clc 2cld 2evw 2gdp 2lcf 2lwi 2n42 2n46 2q21 2quz 2rga 2rgb 2rgc 2rgd 2rge 2rgg 2uzi 2vh5 2x1v 3ddc 3i3s 3k8y 3k9l 3k9n 3kkm 3kkn 3kud 3l8y 3l8z 3lbh 3lbi 3lbn 3lo5 3oiu 3oiv 3oiw 3rry 3rrz 3rs0 3rs2 3rs3 3rs4 3rs5 3rs7 3rsl 3rso 3tgp 421p 4dlr 4dls 4dlt 4dlu 4dlv 4dlw 4dlx 4dly 4dlz 4dst 4dsu 4efl 4efm 4efn 4g0n 4g3x 4k81 4l9s 4l9w 4nyi 4nyj 4nym 4q21 4rsg 4uru 4urw 4urx 4ury 4urz 4us0 4us1 4us2 4xvq 4xvr 521p 5b2z 5b30 5e95 5p21 621p 6q21 721p 821p
        SOS1_HUMAN | Q078891awe 1bkd 1dbh 1nvu 1nvv 1nvw 1nvx 1q9c 1xd2 1xd4 1xdv 2ii0 3ksy 4nyi 4nyj 4nym 4uru 4urw 4urx 4ury 4urz 4us0 4us1 4us2

(-) Related Entries Specified in the PDB File

4uru THE CRYSTAL STRUCTURE OF H-RAS AND SOS IN COMPLEX WITH LIGANDS
4urw THE CRYSTAL STRUCTURE OF H-RAS AND SOS IN COMPLEX WITH LIGANDS
4urx THE CRYSTAL STRUCTURE OF H-RAS AND SOS IN COMPLEX WITH LIGANDS
4ury THE CRYSTAL STRUCTURE OF H-RAS AND SOS IN COMPLEX WITH LIGANDS
4urz THE CRYSTAL STRUCTURE OF H-RAS AND SOS IN COMPLEX WITH LIGANDS
4us0 THE CRYSTAL STRUCTURE OF H-RAS AND SOS IN COMPLEX WITH LIGANDS
4us1 THE CRYSTAL STRUCTURE OF H-RAS AND SOS IN COMPLEX WITH LIGANDS
4us2 THE CRYSTAL STRUCTURE OF H-RAS AND SOS IN COMPLEX WITH LIGANDS