Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit - manually
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit - manually
Asym./Biol. Unit - manually  (Jmol Viewer)
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  L-RHAMNOSE ISOMERASE
 
Authors :  I. P. Korndorfer, B. W. Matthews
Date :  26 Oct 99  (Deposition) - 27 Sep 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Beta-Alpha-8-Barrels, Aldose-Ketose Isomerization, Hydride Shift, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. P. Korndorfer, W. D. Fessner, B. W. Matthews
The Structure Of Rhamnose Isomerase From Escherichia Coli And Its Relation With Xylose Isomerase Illustrates A Change Between Inter And Intra-Subunit Complementation During Evolution.
J. Mol. Biol. V. 300 917 2000
PubMed-ID: 10891278  |  Reference-DOI: 10.1006/JMBI.2000.3896
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - L-RHAMNOSE ISOMERASE
    Chains: A, B, C, D
    EC Number: 5.3.1.14
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28(B)+ FROM NEW ENGLAND BIOLABS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 37)

Asymmetric/Biological Unit (2, 37)
No.NameCountTypeFull Name
1MSE33Mod. Amino AcidSELENOMETHIONINE
2ZN4Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:234 , ASP A:267 , HIS A:294 , ASP A:334BINDING SITE FOR RESIDUE ZN A 450
2AC2SOFTWAREGLU B:234 , ASP B:267 , HIS B:294 , ASP B:334BINDING SITE FOR RESIDUE ZN B 450
3AC3SOFTWAREGLU C:234 , ASP C:267 , HIS C:294 , ASP C:334BINDING SITE FOR RESIDUE ZN C 450
4AC4SOFTWAREGLU D:234 , ASP D:267 , HIS D:294 , ASP D:334BINDING SITE FOR RESIDUE ZN D 450

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1D8W)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1D8W)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1D8W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1D8W)

(-) Exons   (0, 0)

(no "Exon" information available for 1D8W)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:402
 aligned with RHAA_ECOLI | P32170 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:416
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412      
           RHAA_ECOLI     3 TQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRR 418
               SCOP domains d1d8wa_ A: L-rhamnose isomerase                                                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1d8wA00 A:11-426 Divalent-metal-dependent TIM b              arrel enzymes                                                                                                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh..hhhhhhhhhh...eeee.hhhh......--------------.......hhhhhhhhhhhhhhh....eeeeee.hhh......hhhhhhhhhhhhhhhhhhhh..eeeee.....hhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee....ee......hhhhhhhhhhhhhhhh........eeeeee..........ee..hhhhhhhhhhhhh.eeeee........hhhhhhhhhh.....eeeee..............hhhhhhhhhhhhhh.....eeeee.......hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhh......hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1d8w A  11 TQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSmHCWQGDDVSGFE--------------NYPGKARNASELRADLEQAmRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVmNIWIPDGmKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYmGYATSRQTALCLDAGHFHPTEVISDKISAAmLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNmKKALLRALLEPTAELRKLEAPGDYTARLALLEEQKSLPWQAVWEmYCQRHDTPAGSEWLESVRAYEKEILSRR 426
                                    20        30        40    |   50      |  -         - |      80        90|      100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250   |   260       270       280    |  290       300       310       320       330       340       350  |    360       370       380       390       400       410       420      
                                                             45-MSE      57             72                 91-MSE                                                                                            190-MSE 198-MSE                                                 254-MSE                        285-MSE                                                             353-MSE                                      398-MSE                        


Chain B from PDB  Type:PROTEIN  Length:402
 aligned with RHAA_ECOLI | P32170 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:417
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       
           RHAA_ECOLI     2 TTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRR 418
               SCOP domains d1d8wb_ B: L-rhamnose isomerase                                                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1d8wB00 B:10-426 Divalent-metal-dependent TIM ba               rrel enzymes                                                                                                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh...hhhhhhhhhh...eeee.hhh.......---------------......hhhhhhhhhhhhhh.....eeeeee.hhh......hhhhhhhhhhhhhhhhhhhh..eeeee.....hhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee....ee......hhhhhhhhhhhhhhhh........eeeeee..........ee..hhhhhhhhhhhhh.eeeee........hhhhhhhhhh.....eeeee..............hhhhhhhhhhhhhh.....eeeee.......hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1d8w B  10 TTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSmHCWQGDDVSGFE---------------YPGKARNASELRADLEQAmRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVmNIWIPDGmKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYmGYATSRQTALCLDAGHFHPTEVISDKISAAmLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNmKKALLRALLEPTAELRKLEAPGDYTARLALLEEQKSLPWQAVWEmYCQRHDTPAGSEWLESVRAYEKEILSRR 426
                                    19        29        39     |  49       | -         -   |    79        89 |      99       109       119       129       139       149       159       169       179       189|      199       209       219       229       239       249    |  259       269       279     | 289       299       309       319       329       339       349   |   359       369       379       389       399       409       419       
                                                              45-MSE      57              73                91-MSE                                                                                            190-MSE 198-MSE                                                 254-MSE                        285-MSE                                                             353-MSE                                      398-MSE                        


Chain C from PDB  Type:PROTEIN  Length:401
 aligned with RHAA_ECOLI | P32170 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:416
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412      
           RHAA_ECOLI     3 TQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRR 418
               SCOP domains d1d8wc_ C: L-rhamnose isomerase                                                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1d8wC00 C:11-426 Divalent-metal-dependent TIM b               arrel enzymes                                                                                                                                                                                                                                                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh..hhhhhhhhhh...eeee.hhhh......---------------......hhhhhhhhhhhhhh.....eeeeee.hhh......hhhhhhhhhhhhhhhhhhhh..eeeee.....hhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee....ee......hhhhhhhhhhhhhhhh........eeeeee..........ee..hhhhhhhhhhhhh.eeeee........hhhhhhhhhh.....eeeee..............hhhhhhhhhhhhhh.....eeeee.......hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1d8w C  11 TQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSmHCWQGDDVSGFE---------------YPGKARNASELRADLEQAmRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVmNIWIPDGmKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYmGYATSRQTALCLDAGHFHPTEVISDKISAAmLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNmKKALLRALLEPTAELRKLEAPGDYTARLALLEEQKSLPWQAVWEmYCQRHDTPAGSEWLESVRAYEKEILSRR 426
                                    20        30        40    |   50      |  -         -  |     80        90|      100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250   |   260       270       280    |  290       300       310       320       330       340       350  |    360       370       380       390       400       410       420      
                                                             45-MSE      57              73                91-MSE                                                                                            190-MSE 198-MSE                                                 254-MSE                        285-MSE                                                             353-MSE                                      398-MSE                        


Chain D from PDB  Type:PROTEIN  Length:403
 aligned with RHAA_ECOLI | P32170 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:418
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410        
           RHAA_ECOLI     1 MTTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRR 418
               SCOP domains d1d8wd_ D: L-rhamnose isomerase                                                                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains -1d8wD00 D:10-426 Divalent-metal-dependent TIM ba               rrel enzymes                                                                                                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh...hhhhhhhhhh...eeee.hhhh......---------------......hhhhhhhhhhhhhh.....eeeeee.hhh......hhhhhhhhhhhhhhhhhhhh..eeeee.....hhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee....ee......hhhhhhhhhhhhhhhh........eeeeee..........ee..hhhhhhhhhhhhh.eeeee........hhhhhhhhhh.....eeeee..............hhhhhhhhhhhhhh.....eeeee.......hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1d8w D   9 mTTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSmHCWQGDDVSGFE---------------YPGKARNASELRADLEQAmRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVmNIWIPDGmKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYmGYATSRQTALCLDAGHFHPTEVISDKISAAmLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNmKKALLRALLEPTAELRKLEAPGDYTARLALLEEQKSLPWQAVWEmYCQRHDTPAGSEWLESVRAYEKEILSRR 426
                            |       18        28        38      | 48        |-         -    |   78        88  |     98       108       118       128       138       148       158       168       178       188 |     198       208       218       228       238       248     | 258       268       278      |288       298       308       318       328       338       348    |  358       368       378       388       398       408       418        
                            9-MSE                              45-MSE      57              73                91-MSE                                                                                            190-MSE 198-MSE                                                 254-MSE                        285-MSE                                                             353-MSE                                      398-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1D8W)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (RHAA_ECOLI | P32170)
molecular function
    GO:0008740    L-rhamnose isomerase activity    Catalysis of the reaction: L-rhamnose = L-rhamnulose.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0030145    manganese ion binding    Interacting selectively and non-covalently with manganese (Mn) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0019324    L-lyxose metabolic process    The chemical reactions and pathways involving L-lyxose, the L-enantiomer of aldopentose lyxo-pentose, the C-2 epimer of xylose.
    GO:0019301    rhamnose catabolic process    The chemical reactions and pathways resulting in the breakdown of rhamnose, the hexose 6-deoxy-L-mannose.
    GO:0019299    rhamnose metabolic process    The chemical reactions and pathways involving rhamnose, the hexose 6-deoxy-L-mannose. Rhamnose occurs commonly as a compound of plant glycosides, in polysaccharides of gums and mucilages, and in bacterial polysaccharides. It is also a component of some plant cell wall polysaccharides and frequently acts as the sugar components of flavonoids.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    ZN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1d8w)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1d8w
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  RHAA_ECOLI | P32170
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  5.3.1.14
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  RHAA_ECOLI | P32170
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RHAA_ECOLI | P32170: 1de5 1de6

(-) Related Entries Specified in the PDB File

1de5 STRUCTURE OF RHAMNOSE ISOMERASE IN THE PRESENCE OF L- RHAMNITOL
1de6 STRUCTURE OF (SEMET) RHAMNOSE ISOMERASE