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(-) Description

Title :  L-RHAMNOSE ISOMERASE
 
Authors :  I. P. Korndorfer, W. D. Fessner, B. W. Matthews
Date :  12 Nov 99  (Deposition) - 09 Aug 00  (Release) - 22 Dec 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  (Beta8/Alpha8) Barrel, Tim Barrel, Hydride Shift, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. P. Korndorfer, W. D. Fessner, B. W. Matthews
The Structure Of Rhamnose Isomerase From Escherichia Coli And Its Relation With Xylose Isomerase Illustrates A Change Between Inter And Intra-Subunit Complementation During Evolution.
J. Mol. Biol. V. 300 917 2000
PubMed-ID: 10891278  |  Reference-DOI: 10.1006/JMBI.2000.3896

(-) Compounds

Molecule 1 - L-RHAMNOSE ISOMERASE
    Chains: A, B, C, D
    EC Number: 5.3.1.14
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28B(+)
    Expression System Taxid: 562
    Expression System Variant: PIK61
    Expression System Vector Type: PLASMID
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1RNT4Ligand/IonL-RHAMNITOL
2ZN4Ligand/IonZINC ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:48 , ILE A:67 , HIS A:103 , TRP A:193 , GLU A:234 , LYS A:236 , ASP A:267 , HIS A:270 , HIS A:294 , ASP A:302 , ASP A:334 , PHE A:336 , ZN A:450 , HOH A:1461 , HOH A:1462 , HOH A:1614BINDING SITE FOR RESIDUE RNT A 1460
2AC2SOFTWARETRP B:48 , ILE B:67 , HIS B:103 , TRP B:193 , GLU B:234 , LYS B:236 , ASP B:267 , HIS B:270 , HIS B:294 , ASP B:302 , ASP B:334 , PHE B:336 , ZN B:450 , HOH B:2625BINDING SITE FOR RESIDUE RNT B 2460
3AC3SOFTWARETRP C:48 , ILE C:67 , HIS C:103 , TRP C:193 , GLU C:234 , LYS C:236 , ASP C:267 , HIS C:270 , HIS C:294 , ASP C:302 , ASP C:334 , ZN C:450 , HOH C:3584BINDING SITE FOR RESIDUE RNT C 3460
4AC4SOFTWARETRP D:48 , ILE D:67 , HIS D:103 , TRP D:193 , GLU D:234 , LYS D:236 , ASP D:267 , HIS D:270 , HIS D:294 , ASP D:302 , ASP D:334 , ZN D:450 , HOH D:4630BINDING SITE FOR RESIDUE RNT D 4460
5AC5SOFTWAREGLU A:234 , ASP A:267 , HIS A:294 , ASP A:334 , RNT A:1460BINDING SITE FOR RESIDUE ZN A 450
6AC6SOFTWAREGLU B:234 , ASP B:267 , HIS B:294 , ASP B:334 , RNT B:2460BINDING SITE FOR RESIDUE ZN B 450
7AC7SOFTWAREGLU C:234 , ASP C:267 , HIS C:294 , ASP C:334 , RNT C:3460BINDING SITE FOR RESIDUE ZN C 450
8AC8SOFTWAREGLU D:234 , ASP D:267 , HIS D:294 , ASP D:334 , RNT D:4460BINDING SITE FOR RESIDUE ZN D 450

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1DE5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1DE5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1DE5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1DE5)

(-) Exons   (0, 0)

(no "Exon" information available for 1DE5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:417
 aligned with RHAA_ECOLI | P32170 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:417
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       
           RHAA_ECOLI     2 TTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRR 418
               SCOP domains d1de5a_ A: L-rhamnose isomerase                                                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1de5A00 A:10-426 Divalent-metal-dependent TIM barrel enzymes                                                                                                                                                                                                                                                                                                                                                                      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh..hhhhhhhhhh...eeee.hhh............................hhhhhhhhhhhhhh.....eeeeee.hhh......hhhhhhhhhhhhhhhhhhhhh.eeeee.....hhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee....ee......hhhhhhhhhhhhhhhh........eeeeee..........ee..hhhhhhhhhhhhh.eeeee...........hhhhhhh.....eeeee..............hhhhhhhhhhhhhh.....eeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1de5 A  10 TTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAPGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRR 426
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       


Chain B from PDB  Type:PROTEIN  Length:416
 aligned with RHAA_ECOLI | P32170 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:416
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412      
           RHAA_ECOLI     3 TQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRR 418
               SCOP domains d1de5b_ B: L-rhamnose isomerase                                                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1de5B00 B:11-426 Divalent-metal-dependent TIM barrel enzymes                                                                                                                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh..hhhhhhhhhh...eeee.hhhhh..........................hhhhhhhhhhhhhh.....eeeeee.hhh......hhhhhhhhhhhhhhhhhhhhh.eeeee.....hhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee....ee......hhhhhhhhhhhhhhhhh.......eeeeee..........ee..hhhhhhhhhhhhh.eeeee........hhhhhhhhhh.....eeeee..............hhhhhhhhhhhhhh.....eeeee.......hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1de5 B  11 TQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAPGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRR 426
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420      


Chain C from PDB  Type:PROTEIN  Length:416
 aligned with RHAA_ECOLI | P32170 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:416
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412      
           RHAA_ECOLI     3 TQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRR 418
               SCOP domains d1de5c_ C: L-rhamnose isomerase                                                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1de5C00 C:11-426 Divalent-metal-dependent TIM barrel enzymes                                                                                                                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh...hhhhhhhhhh...eeee.hhh............................hhhhhhhhhhhhhh.....eeeeee.hhh......hhhhhhhhhhhhhhhhhhhhh.eeeee.....hhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee....ee......hhhhhhhhhhhhhhhhh.......eeeeee..........ee..hhhhhhhhhhhh..eeeee........hhhhhhhhhh.....eeeee..............hhhhhhhhhhhhhh.....eeeee.......hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1de5 C  11 TQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAPGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRR 426
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420      


Chain D from PDB  Type:PROTEIN  Length:416
 aligned with RHAA_ECOLI | P32170 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:416
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412      
           RHAA_ECOLI     3 TQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRR 418
               SCOP domains d1de5d_ D: L-rhamnose isomerase                                                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1de5D00 D:11-426 Divalent-metal-dependent TIM barrel enzymes                                                                                                                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh...hhhhhhhhhh...eeee.hhhhh..........................hhhhhhhhhhhhhh.....eeeeee.hhh......hhhhhhhhhhhhhhhhhhhh..eeeee.....hhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee....ee......hhhhhhhhhhhhhhhhhh......eeeeee..........ee..hhhhhhhhhhhhh.eeeee........hhhhhhhhhh.....eeeee..............hhhhhhhhhhhhhh.....eeeee.......hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1de5 D  11 TQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAPGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLESVRAYEKEILSRR 426
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1DE5)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (RHAA_ECOLI | P32170)
molecular function
    GO:0008740    L-rhamnose isomerase activity    Catalysis of the reaction: L-rhamnose = L-rhamnulose.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0030145    manganese ion binding    Interacting selectively and non-covalently with manganese (Mn) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0019324    L-lyxose metabolic process    The chemical reactions and pathways involving L-lyxose, the L-enantiomer of aldopentose lyxo-pentose, the C-2 epimer of xylose.
    GO:0019301    rhamnose catabolic process    The chemical reactions and pathways resulting in the breakdown of rhamnose, the hexose 6-deoxy-L-mannose.
    GO:0019299    rhamnose metabolic process    The chemical reactions and pathways involving rhamnose, the hexose 6-deoxy-L-mannose. Rhamnose occurs commonly as a compound of plant glycosides, in polysaccharides of gums and mucilages, and in bacterial polysaccharides. It is also a component of some plant cell wall polysaccharides and frequently acts as the sugar components of flavonoids.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RHAA_ECOLI | P32170: 1d8w 1de6

(-) Related Entries Specified in the PDB File

1d8w STRUCTURE OF (SEMET) RHAMNOSE ISOMERASE
1de6 STRUCTURE OF RHAMNOSE ISOMERASE IN THE PRESENCE OF L- RHAMNOSE AND MN2+