1CEV - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   ARGINASE FROM BACILLUS CALDOVELOX, NATIVE STRUCTURE AT PH 5.6

Authors :   M. C. Bewley, P. D. Jeffrey, M. L. Patchett, Z. F. Kanyo, E. N. Baker

Date :   12 Mar 99 (Deposition) - 16 Apr 99 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F  (1x)
Biol. Unit 2: A (1x),B (1x),C (1x),D (1x),E (1x),F (1x)

Keywords :   Enzyme, Hydrolase, Arginine Hydrolysis, Nitrogen Metabolism, Manganese Metalloenzyme (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. C. Bewley, P. D. Jeffrey, M. L. Patchett, Z. F. Kanyo, E. N. Baker
Crystal Structures Of Bacillus Caldovelox Arginase In Complex With Substrate And Inhibitors Reveal New Insights Into Activation, Inhibition And Catalysis In The Arginase Superfamily.
Structure Fold. Des. V. 7 435 1999
PubMed-ID: 10196128 | Reference-DOI: 10.1016/S0969-2126(99)80056-2

Molecule 1 - PROTEIN (ARGINASE)
	Chains	:	A, B, C, D, E, F
	EC Number	:	3.5.3.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Cell Line	:	BL21
	Expression System Taxid	:	562
	Organism Scientific	:	BACILLUS CALDOVELOX
	Organism Taxid	:	33931
	Other Details	:	BACILLUS SPECIES DSM 411
	Strain	:	BACILLUS SPECIES DSM 411

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A	B	C	D	E	F
Biological Unit 2 (1x)	:	A (1x)	B (1x)	C (1x)	D (1x)	E (1x)	F (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 12)

No.	Name	Count	Type	Full Name
1	MN	12	Ligand/Ion	MANGANESE (II) ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	MN	-1	Ligand/Ion	MANGANESE (II) ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	MN	-1	Ligand/Ion	MANGANESE (II) ION

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:99 , ASP A:122 , ASP A:126 , ASP A:226 , MN A:301	BINDING SITE FOR RESIDUE MN A 300
02	AC2	SOFTWARE	ASP A:122 , HIS A:124 , ASP A:226 , ASP A:228 , MN A:300	BINDING SITE FOR RESIDUE MN A 301
03	AC3	SOFTWARE	HIS B:99 , ASP B:122 , ASP B:126 , ASP B:226	BINDING SITE FOR RESIDUE MN B 300
04	AC4	SOFTWARE	ASP B:122 , HIS B:124 , ASP B:226 , ASP B:228	BINDING SITE FOR RESIDUE MN B 301
05	AC5	SOFTWARE	HIS C:99 , ASP C:122 , ASP C:126 , ASP C:226 , MN C:301	BINDING SITE FOR RESIDUE MN C 300
06	AC6	SOFTWARE	ASP C:122 , HIS C:124 , ASP C:226 , ASP C:228 , MN C:300	BINDING SITE FOR RESIDUE MN C 301
07	AC7	SOFTWARE	HIS D:99 , ASP D:122 , ASP D:126 , ASP D:226 , MN D:301	BINDING SITE FOR RESIDUE MN D 300
08	AC8	SOFTWARE	ASP D:122 , HIS D:124 , ASP D:226 , ASP D:228 , MN D:300	BINDING SITE FOR RESIDUE MN D 301
09	AC9	SOFTWARE	HIS E:99 , ASP E:122 , ASP E:126 , ASP E:226	BINDING SITE FOR RESIDUE MN E 300
10	BC1	SOFTWARE	ASP E:122 , HIS E:124 , ASP E:226 , ASP E:228	BINDING SITE FOR RESIDUE MN E 301
11	BC2	SOFTWARE	HIS F:99 , ASP F:122 , ASP F:126 , ASP F:226 , MN F:301	BINDING SITE FOR RESIDUE MN F 300
12	BC3	SOFTWARE	ASP F:122 , HIS F:124 , ASP F:226 , ASP F:228 , MN F:300	BINDING SITE FOR RESIDUE MN F 301
13	MNA	AUTHOR	MN A:300 , MN A:301 , HIS A:99 , ASP A:122 , HIS A:124 , ASP A:126 , ASP A:226 , ASP A:228	SITE COMPRISES TWO MN ATOMS, MN A 300 AND MN A 301 MN A 300 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2 AND ASP 226 OD2. MN A 301 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, AND ASP 228 OD2.
14	MNB	AUTHOR	MN B:300 , MN B:301 , HIS B:99 , ASP B:122 , HIS B:124 , ASP B:126 , ASP B:226 , ASP B:228	SITE COMPRISES TWO MN ATOMS, MN B 300 AND MN B 301 MN B 300 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, AND ASP 226 OD2. MN B 301 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, AND ASP 228 OD2.
15	MNC	AUTHOR	MN C:300 , MN C:301 , HIS C:99 , ASP C:122 , HIS C:124 , ASP C:126 , ASP C:226 , ASP C:228	SITE COMPRISES TWO MN ATOMS, MN C 300 AND MN C 301 MN C 300 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, AND ASP 226 OD2. MN C 301 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, AND ASP 228 OD2.
16	MND	AUTHOR	MN D:300 , MN D:301 , HIS D:99 , ASP D:122 , HIS D:124 , ASP D:126 , ASP D:226 , ASP D:228	SITE COMPRISES TWO MN ATOMS, MN D 300 AND MN D 301 MN D 300 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, AND ASP 226 OD2. MN D 301 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, AND ASP 228 OD2.
17	MNE	AUTHOR	MN E:300 , MN E:301 , HIS E:99 , ASP E:122 , HIS E:124 , ASP E:126 , ASP E:226 , ASP E:228	SITE COMPRISES TWO MN ATOMS, MN E 300 AND MN E 301 MN E 300 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, AND ASP 226 OD2. MN E 301 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, AND ASP 228 OD2.
18	MNF	AUTHOR	MN F:300 , MN F:301 , HIS F:99 , ASP F:122 , HIS F:124 , ASP F:126 , ASP F:226 , ASP F:228	SITE COMPRISES TWO MN ATOMS, MN F 300 AND MN F 301 MN F 300 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, AND ASP 226 OD2. MN F 301 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, AND ASP 228 OD2.

(no "SS Bond" information available for 1CEV)

Asymmetric Unit

No.	Residues
1	Ser A:161	-	Pro A:162
2	Ser B:161	-	Pro B:162
3	Ser C:161	-	Pro C:162
4	Ser D:161	-	Pro D:162
5	Ser E:161	-	Pro E:162
6	Ser F:161	-	Pro F:162

(no "SAP(SNP)/Variant" information available for 1CEV)

Asymmetric Unit (2, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ARGINASE_2	PS51409	Arginase family profile.	ARGI_BACCD	1-299	6	A:1-299 B:1-299 C:1-299 D:1-299 E:1-299 F:1-299
2	ARGINASE_1	PS01053	Arginase family signature.	ARGI_BACCD	224-245	6	A:224-245 B:224-245 C:224-245 D:224-245 E:224-245 F:224-245

Biological Unit 1 (2, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ARGINASE_2	PS51409	Arginase family profile.	ARGI_BACCD	1-299	6	A:1-299 B:1-299 C:1-299 D:1-299 E:1-299 F:1-299
2	ARGINASE_1	PS01053	Arginase family signature.	ARGI_BACCD	224-245	6	A:224-245 B:224-245 C:224-245 D:224-245 E:224-245 F:224-245

Biological Unit 2 (2, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ARGINASE_2	PS51409	Arginase family profile.	ARGI_BACCD	1-299	6	A:1-299 B:1-299 C:1-299 D:1-299 E:1-299 F:1-299
2	ARGINASE_1	PS01053	Arginase family signature.	ARGI_BACCD	224-245	6	A:224-245 B:224-245 C:224-245 D:224-245 E:224-245 F:224-245

(no "Exon" information available for 1CEV)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:299
 aligned with ARGI_BACCD | P53608 from UniProtKB/Swiss-Prot  Length:299

    Alignment length:299
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290         
           ARGI_BACCD     1 MKPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
               SCOP domains d1ceva_ A: Arginase                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1cevA00 A:1-299  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..........hhhhhhhhhh..hhhhhhh....eee......................hhhhhhhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhh...eeeeee................hhh.hhhhhh....hhhh.hhh......hhheeeeee....hhhhhhhhhh..eeeehhhhhhh.hhhhhhhhhhhhh....eeeeeeehhh..................hhhhhhhhhhhhhh..eeeeeee..........hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ARGINASE_2  PDB: A:1-299 UniProt: 1-299                                                                                                                                                                                                                                                                     PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARGINASE_1            ------------------------------------------------------ PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1cev A   1 MKPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290

Chain B from PDB  Type:PROTEIN  Length:299
 aligned with ARGI_BACCD | P53608 from UniProtKB/Swiss-Prot  Length:299

    Alignment length:299
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290         
           ARGI_BACCD     1 MKPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
               SCOP domains d1cevb_ B: Arginase                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1cevB00 B:1-299  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..........hhhhhhhhhh..hhhhhhh....eee......................hhhhhhhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhh...eeeeee................hhh.hhhhhh....hhhh.hhh......hhheeeeee....hhhhhhhhhh..eeeehhhhhhh.hhhhhhhhhhhhhhh..eeeeeeehhh..................hhhhhhhhhhhhhh..eeeeeee..........hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ARGINASE_2  PDB: B:1-299 UniProt: 1-299                                                                                                                                                                                                                                                                     PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARGINASE_1            ------------------------------------------------------ PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1cev B   1 MKPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290

Chain C from PDB  Type:PROTEIN  Length:299
 aligned with ARGI_BACCD | P53608 from UniProtKB/Swiss-Prot  Length:299

    Alignment length:299
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290         
           ARGI_BACCD     1 MKPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
               SCOP domains d1cevc_ C: Arginase                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1cevC00 C:1-299  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..........hhhhhhhhhh..hhhhhhh....eee......................hhhhhhhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhh...eeeeee................hhh.hhhhhh....hhhh.hhh......hhheeeeee....hhhhhhhhhh..eeeehhhhhhh.hhhhhhhhhhhhh....eeeeeeehhh..................hhhhhhhhhhhhhh..eeeeeee..........hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ARGINASE_2  PDB: C:1-299 UniProt: 1-299                                                                                                                                                                                                                                                                     PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARGINASE_1            ------------------------------------------------------ PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1cev C   1 MKPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290

Chain D from PDB  Type:PROTEIN  Length:299
 aligned with ARGI_BACCD | P53608 from UniProtKB/Swiss-Prot  Length:299

    Alignment length:299
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290         
           ARGI_BACCD     1 MKPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
               SCOP domains d1cevd_ D: Arginase                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1cevD00 D:1-299  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..........hhhhhhhhhh..hhhhhhh....eee......................hhhhhhhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhh...eeeeee................hhh.hhhhhh....hhhh.hhh......hhheeeeee....hhhhhhhhhh..eeeehhhhhhh.hhhhhhhhhhhhhhh..eeeeeeehhh..................hhhhhhhhhhhhhh..eeeeeee..........hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ARGINASE_2  PDB: D:1-299 UniProt: 1-299                                                                                                                                                                                                                                                                     PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARGINASE_1            ------------------------------------------------------ PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1cev D   1 MKPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290

Chain E from PDB  Type:PROTEIN  Length:299
 aligned with ARGI_BACCD | P53608 from UniProtKB/Swiss-Prot  Length:299

    Alignment length:299
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290         
           ARGI_BACCD     1 MKPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
               SCOP domains d1ceve_ E: Arginase                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1cevE00 E:1-299  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..........hhhhhhhhhh..hhhhhhh....eee......................hhhhhhhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhh...eeeeee................hhh.hhhhhh....hhhh.hhh......hhheeeeee....hhhhhhhhhh..eeeehhhhhhh.hhhhhhhhhhhhhhh..eeeeeeehhh..................hhhhhhhhhhhhhh..eeeeeee..........hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ARGINASE_2  PDB: E:1-299 UniProt: 1-299                                                                                                                                                                                                                                                                     PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARGINASE_1            ------------------------------------------------------ PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1cev E   1 MKPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290

Chain F from PDB  Type:PROTEIN  Length:299
 aligned with ARGI_BACCD | P53608 from UniProtKB/Swiss-Prot  Length:299

    Alignment length:299
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290         
           ARGI_BACCD     1 MKPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
               SCOP domains d1cevf_ F: Arginase                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1cevF00 F:1-299  [code=3.40.800.10, no name defined]                                                                                                                                                                                                                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..........hhhhhhhhhh..hhhhhhh....eee......................hhhhhhhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhh...eeeeee................hhh.hhhhhh....hhhh.hhh......hhheeeeee....hhhhhhhhhh..eeeehhhhhhh.hhhhhhhhhhhhhhh..eeeeeeehhh..................hhhhhhhhhhhhhh..eeeeeee...hhh....hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ARGINASE_2  PDB: F:1-299 UniProt: 1-299                                                                                                                                                                                                                                                                     PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARGINASE_1            ------------------------------------------------------ PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1cev F   1 MKPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM 299
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Arginase/deacetylase (138)

Superfamily: Arginase/deacetylase (138)

Family: Arginase-like amidino hydrolases (97)

Protein domain: Arginase (73)

Bacillus caldovelox [TaxId: 33931] (5)

1a	d1ceva_	A:
1b	d1cevb_	B:
1c	d1cevc_	C:
1d	d1cevd_	D:
1e	d1ceve_	E:
1f	d1cevf_	F:

Asymmetric Unit

Classes(

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Architectures( (-)

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Topologies( (-)

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Homologous Superfamilies( (-)

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Organisms( (-)

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Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Arginase; Chain A (84)

Homologous Superfamily: [code=3.40.800.10, no name defined] (63)

Bacillus caldovelox. Organism_taxid: 33931. Strain: bacillus species dsm 411. (5)

1a	1cevA00	A:1-299
1b	1cevE00	E:1-299
1c	1cevF00	F:1-299
1d	1cevB00	B:1-299
1e	1cevC00	C:1-299
1f	1cevD00	D:1-299

(no "Pfam Domain" information available for 1CEV)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (ARGI_BACCD | P53608)

molecular function
	GO:0004053	arginase activity	Catalysis of the reaction: L-arginine + H2O = L-ornithine + urea.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016813	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines	Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a linear amidine, a compound of the form R-C(=NH)-NH2.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0006525	arginine metabolic process	The chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
	GO:0000050	urea cycle	The sequence of reactions by which arginine is synthesized from ornithine, then cleaved to yield urea and regenerate ornithine. The overall reaction equation is NH3 + CO2 + aspartate + 3 ATP + 2 H2O = urea + fumarate + 2 ADP + 2 phosphate + AMP + diphosphate.

Asymmetric Unit
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	Cis Peptide Bonds
		Ser A:161 - Pro A:162	[ RasMol ]
		Ser B:161 - Pro B:162	[ RasMol ]
		Ser C:161 - Pro C:162	[ RasMol ]
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	1cev
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	ARGI_BACCD \| P53608	:	2cev 3cev 4cev 5cev

(no "Related Entries Specified in the PDB File" available for 1CEV)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 12)

Sites (18, 18)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 12)

Exons (0, 0)

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