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1CEV
Biol. Unit 2
Info
Asym.Unit (282 KB)
Biol.Unit 1 (276 KB)
Biol.Unit 2 (275 KB)
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(1)
Title
:
ARGINASE FROM BACILLUS CALDOVELOX, NATIVE STRUCTURE AT PH 5.6
Authors
:
M. C. Bewley, P. D. Jeffrey, M. L. Patchett, Z. F. Kanyo, E. N. Baker
Date
:
12 Mar 99 (Deposition) - 16 Apr 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: A,B,C,D,E,F (1x)
Keywords
:
Enzyme, Hydrolase, Arginine Hydrolysis, Nitrogen Metabolism, Manganese Metalloenzyme
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. C. Bewley, P. D. Jeffrey, M. L. Patchett, Z. F. Kanyo, E. N. Baker
Crystal Structures Of Bacillus Caldovelox Arginase In Complex With Substrate And Inhibitors Reveal New Insights Into Activation, Inhibition And Catalysis In The Arginase Superfamily.
Structure Fold. Des. V. 7 435 1999
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
1b: MANGANESE (II) ION (MNb)
1c: MANGANESE (II) ION (MNc)
1d: MANGANESE (II) ION (MNd)
1e: MANGANESE (II) ION (MNe)
1f: MANGANESE (II) ION (MNf)
1g: MANGANESE (II) ION (MNg)
1h: MANGANESE (II) ION (MNh)
1i: MANGANESE (II) ION (MNi)
1j: MANGANESE (II) ION (MNj)
1k: MANGANESE (II) ION (MNk)
1l: MANGANESE (II) ION (MNl)
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: MNA (AUTHOR)
14: MNB (AUTHOR)
15: MNC (AUTHOR)
16: MND (AUTHOR)
17: MNE (AUTHOR)
18: MNF (AUTHOR)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:99 , ASP A:122 , ASP A:126 , ASP A:226 , MN A:301
BINDING SITE FOR RESIDUE MN A 300
02
AC2
SOFTWARE
ASP A:122 , HIS A:124 , ASP A:226 , ASP A:228 , MN A:300
BINDING SITE FOR RESIDUE MN A 301
03
AC3
SOFTWARE
HIS B:99 , ASP B:122 , ASP B:126 , ASP B:226
BINDING SITE FOR RESIDUE MN B 300
04
AC4
SOFTWARE
ASP B:122 , HIS B:124 , ASP B:226 , ASP B:228
BINDING SITE FOR RESIDUE MN B 301
05
AC5
SOFTWARE
HIS C:99 , ASP C:122 , ASP C:126 , ASP C:226 , MN C:301
BINDING SITE FOR RESIDUE MN C 300
06
AC6
SOFTWARE
ASP C:122 , HIS C:124 , ASP C:226 , ASP C:228 , MN C:300
BINDING SITE FOR RESIDUE MN C 301
07
AC7
SOFTWARE
HIS D:99 , ASP D:122 , ASP D:126 , ASP D:226 , MN D:301
BINDING SITE FOR RESIDUE MN D 300
08
AC8
SOFTWARE
ASP D:122 , HIS D:124 , ASP D:226 , ASP D:228 , MN D:300
BINDING SITE FOR RESIDUE MN D 301
09
AC9
SOFTWARE
HIS E:99 , ASP E:122 , ASP E:126 , ASP E:226
BINDING SITE FOR RESIDUE MN E 300
10
BC1
SOFTWARE
ASP E:122 , HIS E:124 , ASP E:226 , ASP E:228
BINDING SITE FOR RESIDUE MN E 301
11
BC2
SOFTWARE
HIS F:99 , ASP F:122 , ASP F:126 , ASP F:226 , MN F:301
BINDING SITE FOR RESIDUE MN F 300
12
BC3
SOFTWARE
ASP F:122 , HIS F:124 , ASP F:226 , ASP F:228 , MN F:300
BINDING SITE FOR RESIDUE MN F 301
13
MNA
AUTHOR
MN A:300 , MN A:301 , HIS A:99 , ASP A:122 , HIS A:124 , ASP A:126 , ASP A:226 , ASP A:228
SITE COMPRISES TWO MN ATOMS, MN A 300 AND MN A 301 MN A 300 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2 AND ASP 226 OD2. MN A 301 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, AND ASP 228 OD2.
14
MNB
AUTHOR
MN B:300 , MN B:301 , HIS B:99 , ASP B:122 , HIS B:124 , ASP B:126 , ASP B:226 , ASP B:228
SITE COMPRISES TWO MN ATOMS, MN B 300 AND MN B 301 MN B 300 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, AND ASP 226 OD2. MN B 301 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, AND ASP 228 OD2.
15
MNC
AUTHOR
MN C:300 , MN C:301 , HIS C:99 , ASP C:122 , HIS C:124 , ASP C:126 , ASP C:226 , ASP C:228
SITE COMPRISES TWO MN ATOMS, MN C 300 AND MN C 301 MN C 300 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, AND ASP 226 OD2. MN C 301 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, AND ASP 228 OD2.
16
MND
AUTHOR
MN D:300 , MN D:301 , HIS D:99 , ASP D:122 , HIS D:124 , ASP D:126 , ASP D:226 , ASP D:228
SITE COMPRISES TWO MN ATOMS, MN D 300 AND MN D 301 MN D 300 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, AND ASP 226 OD2. MN D 301 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, AND ASP 228 OD2.
17
MNE
AUTHOR
MN E:300 , MN E:301 , HIS E:99 , ASP E:122 , HIS E:124 , ASP E:126 , ASP E:226 , ASP E:228
SITE COMPRISES TWO MN ATOMS, MN E 300 AND MN E 301 MN E 300 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, AND ASP 226 OD2. MN E 301 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, AND ASP 228 OD2.
18
MNF
AUTHOR
MN F:300 , MN F:301 , HIS F:99 , ASP F:122 , HIS F:124 , ASP F:126 , ASP F:226 , ASP F:228
SITE COMPRISES TWO MN ATOMS, MN F 300 AND MN F 301 MN F 300 BOUND TO HIS 99 ND1, ASP 122 OD2, ASP 126 OD2, AND ASP 226 OD2. MN F 301 BOUND TO HIS 124 ND1, ASP 122 OD1, ASP 226 OD2, ASP 228 OD1, AND ASP 228 OD2.
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: ARGINASE_2 (A:1-299,B:1-299,C:1-299,D:1-299,E:...)
2: ARGINASE_1 (A:224-245,B:224-245,C:224-245,D:22...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARGINASE_2
PS51409
Arginase family profile.
ARGI_BACCD
1-299
6
A:1-299
B:1-299
C:1-299
D:1-299
E:1-299
F:1-299
2
ARGINASE_1
PS01053
Arginase family signature.
ARGI_BACCD
224-245
6
A:224-245
B:224-245
C:224-245
D:224-245
E:224-245
F:224-245
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1ceva_ (A:)
1b: SCOP_d1cevb_ (B:)
1c: SCOP_d1cevc_ (C:)
1d: SCOP_d1cevd_ (D:)
1e: SCOP_d1ceve_ (E:)
1f: SCOP_d1cevf_ (F:)
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Protein Domains
(
)
(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Arginase/deacetylase
(138)
Superfamily
:
Arginase/deacetylase
(138)
Family
:
Arginase-like amidino hydrolases
(97)
Protein domain
:
Arginase
(73)
Bacillus caldovelox [TaxId: 33931]
(5)
1a
d1ceva_
A:
1b
d1cevb_
B:
1c
d1cevc_
C:
1d
d1cevd_
D:
1e
d1ceve_
E:
1f
d1cevf_
F:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1cevA00 (A:1-299)
1b: CATH_1cevE00 (E:1-299)
1c: CATH_1cevF00 (F:1-299)
1d: CATH_1cevB00 (B:1-299)
1e: CATH_1cevC00 (C:1-299)
1f: CATH_1cevD00 (D:1-299)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Arginase; Chain A
(84)
Homologous Superfamily
:
[code=3.40.800.10, no name defined]
(63)
Bacillus caldovelox. Organism_taxid: 33931. Strain: bacillus species dsm 411.
(5)
1a
1cevA00
A:1-299
1b
1cevE00
E:1-299
1c
1cevF00
F:1-299
1d
1cevB00
B:1-299
1e
1cevC00
C:1-299
1f
1cevD00
D:1-299
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Pfam Domains
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