Chain A from PDB Type:PROTEIN Length:225
aligned with GFP_AEQVI | P42212 from UniProtKB/Swiss-Prot Length:238
Alignment length:227
13 23 33 43 53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213 223
GFP_AEQVI 4 GEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFSYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGIT 230
SCOP domains d1b9ca_ A: Green fluorescent protein, GFP SCOP domains
CATH domains 1b9cA00 A:4-230 Green Fluorescent Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .hhh...eeeeeeeeeeee..eeeeeeeeeeee....eeeeeeee........hhhh....--..hhh...........hhhh.....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee...................eeeeeeee....eeeeeeeeeee.....eeeeeeeeeeee...........eeeeeeeeee........eeeeeeeeeee... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------Y-------S--------------------------------M-----------------------------------------------------------------------------I----------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1b9c A 4 GEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTF--gVQCFSRYPDHMKQHDFFKSAMPEGYVQERTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYITADKQKNGIKANFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGIT 230
13 23 33 43 53 63| || 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213 223
64 ||
66-CRO
68
Chain B from PDB Type:PROTEIN Length:225
aligned with GFP_AEQVI | P42212 from UniProtKB/Swiss-Prot Length:238
Alignment length:227
13 23 33 43 53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213 223
GFP_AEQVI 4 GEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFSYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGIT 230
SCOP domains d1b9cb_ B: Green fluorescent protein, GFP SCOP domains
CATH domains 1b9cB00 B:4-230 Green Fluorescent Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .hhhh..eeeeeeeeeeee..eeeeeeeeeeee....eeeeeeee........hhhh....--..hhh...........hhhh.....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee...................eeeeeeee....eeeeeeeeeee.....eeeeeeeeeeee...........eeeeeeeeee........eeeeeeeeeee... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------Y-------S--------------------------------M-----------------------------------------------------------------------------I----------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1b9c B 4 GEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTF--gVQCFSRYPDHMKQHDFFKSAMPEGYVQERTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYITADKQKNGIKANFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGIT 230
13 23 33 43 53 63| || 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213 223
64 ||
66-CRO
68
Chain C from PDB Type:PROTEIN Length:225
aligned with GFP_AEQVI | P42212 from UniProtKB/Swiss-Prot Length:238
Alignment length:227
13 23 33 43 53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213 223
GFP_AEQVI 4 GEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFSYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGIT 230
SCOP domains d1b9cc_ C: Green fluorescent protein, GFP SCOP domains
CATH domains 1b9cC00 C:4-230 Green Fluorescent Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .hhhhh.eeeeeeeeeeee..eeeeeeeeeeee....eeeeeeee........hhhh....--..hhh....hhhhhh.hhhh.....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee..................eeeeeeeee....eeeeeeeeeee.....eeeeeeeeeeee...........eeeeeeeeee........eeeeeeeeeee... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------Y-------S--------------------------------M-----------------------------------------------------------------------------I----------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1b9c C 4 GEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTF--gVQCFSRYPDHMKQHDFFKSAMPEGYVQERTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYITADKQKNGIKANFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGIT 230
13 23 33 43 53 63| || 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213 223
64 ||
66-CRO
68
Chain D from PDB Type:PROTEIN Length:225
aligned with GFP_AEQVI | P42212 from UniProtKB/Swiss-Prot Length:238
Alignment length:227
13 23 33 43 53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213 223
GFP_AEQVI 4 GEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFSYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGIT 230
SCOP domains d1b9cd_ D: Green fluorescent protein, GFP SCOP domains
CATH domains 1b9cD00 D:4-230 Green Fluorescent Protein CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .hhhhh.eeeeeeeeeeee..eeeeeeeeeeee....eeeeeeee................--..hhh....hhhhhh.hhhh.....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee..................eeeeeeeee....eeeeeeeeeee.....eeeeeeeeeeee...........eeeeeeeeee........eeeeeeeeeee... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------Y-------S--------------------------------M-----------------------------------------------------------------------------I----------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1b9c D 4 GEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTF--gVQCFSRYPDHMKQHDFFKSAMPEGYVQERTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYITADKQKNGIKANFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGIT 230
13 23 33 43 53 63| || 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213 223
64 ||
66-CRO
68
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |