5UQF - JenaLib

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Title :   CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE INOSINE MONOPHOSPHATE DEHYDROGENASE FROM CAMPYLOBACTER JEJUNI IN THE COMPLEX WITH IMP AND THE INHIBITOR P225

Authors :   Y. Kim, N. Maltseva, M. Makowska-Grzyska, M. Gu, D. Gollapalli, L. Heds W. F. Anderson, A. Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)

Date :   08 Feb 17 (Deposition) - 01 Mar 17 (Release) - 08 Mar 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.73

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (4x)
Biol. Unit 2: B  (4x)
Biol. Unit 3: C  (4x)
Biol. Unit 4: A  (8x)

Keywords :   Impdh, Tim Barrel, Delta Cbs, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Oxidoreductase, Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Kim, N. Maltseva, M. Makowska-Grzyska, M. Gu, D. Gollapalli, L. Hedstrom, W. F. Anderson, A. Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Of The Catalytic Domain Of The Inosine Monophosphate Dehydrogenase From Campylobacter Jejuni In Th Complex With Imp And The Inhibitor P225
To Be Published
PubMed: search

Molecule 1 - INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE
	Chains	:	A, B, C
	EC Number	:	1.1.1.205
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21(DE3) MAGIC
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	GUAB, CJ14980A_1064, GUAB, CJ8486_1016
	Mutation	:	YES
	Organism Scientific	:	CAMPYLOBACTER JEJUNI SUBSP. JEJUNI, CAMPYLOBACTER JEJUNI SUBSP. JEJUNI CG8486
	Organism Taxid	:	32022, 398000
	Synonym	:	IMPDH

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (4x)	:	A
Biological Unit 2 (4x)	:		B
Biological Unit 3 (4x)	:			C
Biological Unit 4 (8x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (7, 29)

No.	Name	Count	Type	Full Name
1	8KY	3	Ligand/Ion	{2-CHLORO-5-[({2-[3-(PROP-1-EN-2-YL)PHENYL]PROPAN-2-YL}CARBAMOYL)AMINO]PHENOXY}ACETIC ACID
2	CL	2	Ligand/Ion	CHLORIDE ION
3	EDO	6	Ligand/Ion	1,2-ETHANEDIOL
4	GOL	2	Ligand/Ion	GLYCEROL
5	IMP	3	Ligand/Ion	INOSINIC ACID
6	K	3	Ligand/Ion	POTASSIUM ION
7	SO4	10	Ligand/Ion	SULFATE ION

Biological Unit 1 (4, 36)

No.	Name	Count	Type	Full Name
1	8KY	4	Ligand/Ion	{2-CHLORO-5-[({2-[3-(PROP-1-EN-2-YL)PHENYL]PROPAN-2-YL}CARBAMOYL)AMINO]PHENOXY}ACETIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	EDO	16	Ligand/Ion	1,2-ETHANEDIOL
4	GOL	-1	Ligand/Ion	GLYCEROL
5	IMP	4	Ligand/Ion	INOSINIC ACID
6	K	-1	Ligand/Ion	POTASSIUM ION
7	SO4	12	Ligand/Ion	SULFATE ION

Biological Unit 2 (5, 40)

No.	Name	Count	Type	Full Name
1	8KY	4	Ligand/Ion	{2-CHLORO-5-[({2-[3-(PROP-1-EN-2-YL)PHENYL]PROPAN-2-YL}CARBAMOYL)AMINO]PHENOXY}ACETIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	EDO	8	Ligand/Ion	1,2-ETHANEDIOL
4	GOL	4	Ligand/Ion	GLYCEROL
5	IMP	4	Ligand/Ion	INOSINIC ACID
6	K	-1	Ligand/Ion	POTASSIUM ION
7	SO4	20	Ligand/Ion	SULFATE ION

Biological Unit 3 (4, 20)

No.	Name	Count	Type	Full Name
1	8KY	4	Ligand/Ion	{2-CHLORO-5-[({2-[3-(PROP-1-EN-2-YL)PHENYL]PROPAN-2-YL}CARBAMOYL)AMINO]PHENOXY}ACETIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	EDO	-1	Ligand/Ion	1,2-ETHANEDIOL
4	GOL	4	Ligand/Ion	GLYCEROL
5	IMP	4	Ligand/Ion	INOSINIC ACID
6	K	-1	Ligand/Ion	POTASSIUM ION
7	SO4	8	Ligand/Ion	SULFATE ION

Biological Unit 4 (4, 72)

No.	Name	Count	Type	Full Name
1	8KY	8	Ligand/Ion	{2-CHLORO-5-[({2-[3-(PROP-1-EN-2-YL)PHENYL]PROPAN-2-YL}CARBAMOYL)AMINO]PHENOXY}ACETIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	EDO	32	Ligand/Ion	1,2-ETHANEDIOL
4	GOL	-1	Ligand/Ion	GLYCEROL
5	IMP	8	Ligand/Ion	INOSINIC ACID
6	K	-1	Ligand/Ion	POTASSIUM ION
7	SO4	24	Ligand/Ion	SULFATE ION

Asymmetric Unit (29, 29)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ALA A:46 , MET A:48 , GLY A:298 , SER A:299 , ILE A:300 , CYS A:301 , ASP A:334 , GLY A:335 , GLY A:336 , GLY A:357 , SER A:358 , TYR A:381 , GLY A:383 , MET A:384 , GLY A:385 , GLU A:411 , 8KY A:501 , EDO A:506	binding site for residue IMP A 500
02	AC2	SOFTWARE	SER A:245 , ALA A:246 , THR A:303 , VAL A:409 , GLU A:411 , SER A:436 , TYR A:440 , IMP A:500 , EDO A:506	binding site for residue 8KY A 501
03	AC3	SOFTWARE	GLY A:296 , GLY A:298 , CYS A:301 , GLU A:465 , SER A:466 , HIS A:467 , HOH A:609	binding site for residue K A 502
04	AC4	SOFTWARE	TYR A:373 , GLN A:374 , ARG A:416	binding site for residue SO4 A 503
05	AC5	SOFTWARE	HIS A:54 , ARG A:55	binding site for residue SO4 A 504
06	AC6	SOFTWARE	GLN A:226 , ARG A:229	binding site for residue SO4 A 505
07	AC7	SOFTWARE	ALA A:246 , GLY A:294 , ILE A:295 , GLY A:296 , CYS A:301 , THR A:303 , TYR A:440 , IMP A:500 , 8KY A:501	binding site for residue EDO A 506
08	AC8	SOFTWARE	ARG A:84	binding site for residue EDO A 507
09	AC9	SOFTWARE	ARG A:62	binding site for residue EDO A 508
10	AD1	SOFTWARE	TYR A:378 , ARG A:416 , THR A:472	binding site for residue EDO A 509
11	AD2	SOFTWARE	ALA B:46 , MET B:48 , GLY B:298 , SER B:299 , ILE B:300 , CYS B:301 , ASP B:334 , GLY B:335 , GLY B:336 , MET B:355 , GLY B:357 , SER B:358 , TYR B:381 , GLY B:383 , MET B:384 , GLY B:385 , GLU B:411 , 8KY B:501 , HOH B:603	binding site for residue IMP B 500
12	AD3	SOFTWARE	PRO B:24 , SER B:245 , THR B:303 , MET B:384 , GLY B:385 , VAL B:409 , GLU B:411 , SER B:436 , GLY B:439 , IMP B:500	binding site for residue 8KY B 501
13	AD4	SOFTWARE	GLY B:296 , GLY B:298 , CYS B:301 , GLU B:465 , SER B:466 , HIS B:467	binding site for residue K B 502
14	AD5	SOFTWARE	ILE B:75 , GLN B:226 , ARG B:229 , HOH B:613	binding site for residue SO4 B 503
15	AD6	SOFTWARE	TYR B:373 , GLN B:374 , TYR C:373 , GLN C:374	binding site for residue SO4 B 504
16	AD7	SOFTWARE	ARG B:376 , TYR B:378 , ARG B:416 , THR B:472	binding site for residue SO4 B 505
17	AD8	SOFTWARE	HIS B:54 , ARG B:55	binding site for residue SO4 B 506
18	AD9	SOFTWARE	LYS B:32 , ASN B:325 , VAL B:329 , PRO B:330	binding site for residue SO4 B 507
19	AE1	SOFTWARE	SER B:422 , ARG B:424	binding site for residue GOL B 508
20	AE2	SOFTWARE	ARG B:16 , PRO B:17 , VAL B:441 , ARG B:452 , ALA B:453 , GLU B:454	binding site for residue EDO B 509
21	AE3	SOFTWARE	PHE B:10 , GLU B:11 , ILE B:305 , GLY B:341 , ASP B:342 , LYS B:345	binding site for residue EDO B 510
22	AE4	SOFTWARE	ALA C:46 , MET C:48 , GLY C:298 , SER C:299 , ILE C:300 , CYS C:301 , ASP C:334 , GLY C:335 , GLY C:336 , GLY C:357 , SER C:358 , TYR C:381 , GLY C:383 , MET C:384 , GLY C:385 , GLU C:411 , 8KY C:502	binding site for residue IMP C 501
23	AE5	SOFTWARE	LEU C:23 , HIS C:247 , THR C:303 , MET C:384 , GLY C:385 , GLU C:411 , SER C:436 , GLY C:439 , TYR C:440 , IMP C:501	binding site for residue 8KY C 502
24	AE6	SOFTWARE	GLY C:296 , GLY C:298 , CYS C:301 , GLU C:465 , SER C:466 , HIS C:467	binding site for residue K C 503
25	AE7	SOFTWARE	GLN C:226 , ARG C:229 , HOH C:612	binding site for residue SO4 C 504
26	AE8	SOFTWARE	TYR C:378 , ARG C:416 , THR C:472	binding site for residue SO4 C 505
27	AE9	SOFTWARE	ARG B:416 , THR B:474 , PHE C:371 , TYR C:373 , ARG C:416 , THR C:474	binding site for residue GOL C 506
28	AF1	SOFTWARE	HIS C:54 , ARG C:55	binding site for residue CL C 507
29	AF2	SOFTWARE	ARG C:62	binding site for residue CL C 508

(no "SS Bond" information available for 5UQF)

Asymmetric Unit

No.	Residues
1	Gly A:272	-	Asn A:273
2	Gly B:272	-	Asn B:273
3	Gly C:272	-	Asn C:273

(no "SAP(SNP)/Variant" information available for 5UQF)

(no "PROSITE Motif" information available for 5UQF)

(no "Exon" information available for 5UQF)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:354
                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........hhh.eee...............eeee..eee...eee.......hhhhhhhhhhhh.eeee....hhhhhhhhhhhhhh.................eeee...hhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhh...eeee........hhhhhhh...hhhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhh..eeeehhhhhh........eee..eeeeeee...hhhhhh.......eeeee...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.eee.hhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5uqf A   0 AMKIVKRALTFEDVLLRPGYSEVLPKEVKIHTKLTKNITLNMPLISAAMDTVTEHRAAIMMARLGGLGVIHKNMDIASQVREVKRVKKSKEYPDANKDNFGRLRVGAAIGVGQMDRVDALVEAGVDVVVLDSAHGHSKGIIDTVKAIKAKYPNLDLIAGNIATAAAAKALCEAGVDAVKVGIGPGSICTTRIVSGVGVPQISAIDECVEEANKFGVPVIADGGIKYSGDIAKALAVGASSVMIGSLLAGTDESPGELFTYQGRQYKSYRGMGSLGAMQKLVPEGIEGRVPYVGSIRSVVHQLLGGLRSSMGYVGAKDIEDFQKRAEFVEITTAGLKESHVHDVTITHEAPNYKV 482
                                     9        19        29        39        49        59        69        79       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       408       418       428       438       448       458       468       478    
                                                                                                                   88|                                                                                                                                                                                         391|                                                                           
                                                                                                                   203                                                                                                                                                                                          407

Chain B from PDB  Type:PROTEIN  Length:355
                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhh.eee...............ee.....ee...eee.......hhhhhhhhhhh..eeee....hhhhhhhhhhhhhh.................eeee...hhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhh....eeee........hhhhhhh...hhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhh..eeee..............eee..eeeeeee...hhhhhhh.......eeeee...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.eee.hhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uqf B   0 AMKIVKRALTFEDVLLRPGYSEVLPKEVKIHTKLTKNITLNMPLISAAMDTVTEHRAAIMMARLGGLGVIHKNMDIASQVREVKRVKKSKEYPDANKDNFGRLRVGAAIGVGQMDRVDALVEAGVDVVVLDSAHGHSKGIIDTVKAIKAKYPNLDLIAGNIATAAAAKALCEAGVDAVKVGIGPGSICTTRIVSGVGVPQISAIDECVEEANKFGVPVIADGGIKYSGDIAKALAVGASSVMIGSLLAGTDESPGELFTYQGRQYKSYRGMGSLGAMQKKLVPEGIEGRVPYVGSIRSVVHQLLGGLRSSMGYVGAKDIEDFQKRAEFVEITTAGLKESHVHDVTITHEAPNYKV 482
                                     9        19        29        39        49        59        69        79       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       407       417       427       437       447       457       467       477     
                                                                                                                   88|                                                                                                                                                                                          392|                                                                           
                                                                                                                   203                                                                                                                                                                                           407

Chain C from PDB  Type:PROTEIN  Length:355
                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhh.eee.......hhhhh...ee.....ee...eee.......hhhhhhhhhhh..eeee....hhhhhhhhhhhhhhh................eeee...hhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhh..eeee........hhhhhh....hhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhh..eeeehhhhhh........eee..eeeeeee...hhhhhhh.......eeeee...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.eee.hhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5uqf C   0 AMKIVKRALTFEDVLLRPGYSEVLPKEVKIHTKLTKNITLNMPLISAAMDTVTEHRAAIMMARLGGLGVIHKNMDIASQVREVKRVKKSKEYPDANKDNFGRLRVGAAIGVGQMDRVDALVEAGVDVVVLDSAHGHSKGIIDTVKAIKAKYPNLDLIAGNIATAAAAKALCEAGVDAVKVGIGPGSICTTRIVSGVGVPQISAIDECVEEANKFGVPVIADGGIKYSGDIAKALAVGASSVMIGSLLAGTDESPGELFTYQGRQYKSYRGMGSLGAMQKKLVPEGIEGRVPYVGSIRSVVHQLLGGLRSSMGYVGAKDIEDFQKRAEFVEITTAGLKESHVHDVTITHEAPNYKV 482
                                     9        19        29        39        49        59        69        79       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       407       417       427       437       447       457       467       477     
                                                                                                                   88|                                                                                                                                                                                          392|                                                                           
                                                                                                                   203                                                                                                                                                                                           407

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5UQF)

(no "CATH Domain" information available for 5UQF)

(no "Pfam Domain" information available for 5UQF)

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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
		Gly A:272 - Asn A:273	[ RasMol ]
		Gly B:272 - Asn B:273	[ RasMol ]
		Gly C:272 - Asn C:273	[ RasMol ]

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	5uqf
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UniProtKB/Swiss-Prot
	A5KFK9_CAMJU \| A5KFK9	:	5uqg 5uqh 5urq

4mz1	THE SAME PROTEIN IN THE COMPLEX WITH IMP AND THE INHIBITOR P12
4mz8	THE SAME PROTEIN IN THE COMPLEX WITH IMP AND THE INHIBITOR C91
4r7j	THE SAME PROTEIN IN THE COMPLEX WITH IMP RELATED ID: CSGID-IDP90781 RELATED DB: TARGETTRACK
5upu
5upv
5upx
5upy
5uqg
5uqh
5urq
5urr
5urs

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (7, 29)

Sites (29, 29)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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Gene Ontology (8, 8)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File