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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE INOSINE MONOPHOSPHATE DEHYDROGENASE FROM MYCOBACTERIUM TUBERCULOSIS IN THE PRESENCE OF TBK6
 
Authors :  Y. Kim, M. Makowska-Grzyska, N. Maltseva, R. Mulligan, M. Gu, J. Sacche W. F. Anderson, A. Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)
Date :  04 Feb 17  (Deposition) - 22 Feb 17  (Release) - 22 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.91
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Impdh, Delta Cbs, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Oxidoreductase, Oxidoreductase- Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, M. Makowska-Grzyska, N. Maltseva, R. Mulligan, M. Gu, J. Sacchettini, W. F. Anderson, A. Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Of The Catalytic Domain Of The Inosine Monophosphate Dehydrogenase From Mycobacterium Tuberculosis In The Presence Of Tbk6
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE
    Chains: A
    EC Number: 1.1.1.205
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3) MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: GUAB, GUAB2, RV3411C, MTCY78.17
    Mutation: YES
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / H37RV)
    Organism Taxid: 83332
    Strain: ATCC 25618 / H37RV
    Synonym: IMPDH,IMPDH2

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
16Q91Ligand/Ion~{N}-(2~{H}-INDAZOL-6-YL)-3,5-DIMETHYL-1~{H}-PYRAZOLE-4-SULFONAMIDE
2IMP1Ligand/IonINOSINIC ACID
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
16Q94Ligand/Ion~{N}-(2~{H}-INDAZOL-6-YL)-3,5-DIMETHYL-1~{H}-PYRAZOLE-4-SULFONAMIDE
2IMP4Ligand/IonINOSINIC ACID

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:83 , MET A:85 , SER A:339 , ILE A:340 , CYS A:341 , ASP A:374 , GLY A:375 , GLY A:376 , GLY A:397 , SER A:398 , TYR A:421 , GLY A:423 , MET A:424 , GLY A:425 , GLU A:458 , GLY A:459 , 6Q9 A:602binding site for residue IMP A 601
2AC2SOFTWAREASP A:283 , ALA A:285 , GLY A:334 , VAL A:335 , GLY A:336 , THR A:343 , MET A:424 , GLY A:425 , IMP A:601binding site for residue 6Q9 A 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UPU)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:312 -Asn A:313

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5UPU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:332
                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhh.eee...............ee.....ee...eee.......hhhhhhhhhhh..eeee....hhhhhhhhhhhhhh......eeee..hhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhh...eeee........hhhhhh....hhhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhh...eeee.............eehhhhh.eeeee...hhhhh.....eeeee...hhhhhhhhhhhhhhhhhhhh...hhhhhh...eee.hhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5upu A  28 DPVPTGGDDPHKVAMLGLTFDDVLLLPAASDVVPATADTSSQLTKKIRLKVPLVSSAMDTVTESRMAIAMARAGGMGVLHRNLPVAEQAGQVEMVKRSGGLLVGAAVGVGGDAWVRAMMLVDAGVDVLVVDTAHAHNRLVLDMVGKLKSEVGDRVEVVGGNVATRSAAAALVDAGADAVKVGVGPGSICTTRVVAGVGAPQITAILEAVAACRPAGVPVIADGGLQYSGDIAKALAAGASTAMLGSLLAGTAEAPGELIFVNGKQYKSYRGMGSLGAMVPEGIEGRVPFRGPLSSVIHQLTGGLRAAMGYTGSPTIEVLQQAQFVRITPAGL 509
                                    37        47        57        67        77        87        97       107       117       127|      262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       457       467       477       487       497       507  
                                                                                                                             127|                                                                                                                                                                              430|                                                     
                                                                                                                              253                                                                                                                                                                               456
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UPU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UPU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UPU)

(-) Gene Ontology  (13, 13)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IMDH_MYCTU | P9WKI7: 4zqm 4zqn 4zqo 4zqp 4zqr 5upv

(-) Related Entries Specified in the PDB File

4zqm THE SAME PROTEIN IN THE PRESENCE OF XMP AND NAD
4zqn THE SAME PROTEIN IN THE PRESENCE OF IMP AND P41
4zqo THE SAME PROTEIN IN THE PRESENCE OF IMP AND Q67
4zqp THE SAME PROTEIN IN THE PRESENCE OF IMP AND MAD1
4zqr THE SAME PROTEIN, APP-FORM RELATED ID: CSGID-IDP91646 RELATED DB: TARGETTRACK
5upv