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(-) Description

Title :  CRYSTAL STRUCTURE OF INOSINE 5'-MONOPHOSPHATE DEHYDROGENASE WITH THE INTERNAL DELETION CONTAINING CBS DOMAIN FROM CAMPYLOBACTER JEJUNI
 
Authors :  Y. Kim, M. Makowska-Grzyska, M. Gu, L. Hedstrom, W. F. Anderson, A. Joac Csgid, Center For Structural Genomics Of Infectious Diseases
Date :  27 Aug 14  (Deposition) - 17 Sep 14  (Release) - 08 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.12
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid, Tim Barrel, Alpha-Beta Structure, Hydrolase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, M. Makowska-Grzyska, M. Gu, L. Hedstrom, W. F. Anderson, A. Joachimiak, Csgid
Crystal Structure Of Inosine 5'-Monophosphate Dehydrogenase With The Internal Deletion Containing Cbs Domain From Campylobacter Jejuni
To Be Published 2014
PubMed: search

(-) Compounds

Molecule 1 - INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE
    Chains: A
    EC Number: 1.1.1.205
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21DE3 GOLD
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: IMPDH-DELTA-S-CBS
    Gene: GUAB, CJ1058C
    Mutation: YES
    Organism Scientific: CAMPYLOBACTER JEJUNI SUBSP. JEJUNI
    Organism Taxid: 192222
    Strain: NCTC 11168

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 8)

Asymmetric Unit (6, 8)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL
3IMP1Ligand/IonINOSINIC ACID
4K1Ligand/IonPOTASSIUM ION
5MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
6SO43Ligand/IonSULFATE ION
Biological Unit 1 (4, 24)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL4Ligand/IonGLYCEROL
3IMP4Ligand/IonINOSINIC ACID
4K-1Ligand/IonPOTASSIUM ION
5MPD4Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
6SO412Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:46 , MET A:48 , ASN A:273 , GLY A:298 , SER A:299 , ILE A:300 , CYS A:301 , ASP A:334 , GLY A:335 , GLY A:336 , MET A:355 , GLY A:357 , SER A:358 , TYR A:381 , GLY A:383 , MET A:384 , GLY A:385 , GLU A:411 , GLY A:412 , HOH A:620 , HOH A:623 , HOH A:647 , HOH A:697 , HOH A:716BINDING SITE FOR RESIDUE IMP A 500
2AC2SOFTWAREHIS A:54BINDING SITE FOR RESIDUE CL A 501
3AC3SOFTWARETYR A:264 , PRO A:265 , ASN A:266 , LEU A:267 , GLU A:285 , PHE A:327BINDING SITE FOR RESIDUE GOL A 502
4AC4SOFTWARELYS A:407 , SER A:422BINDING SITE FOR RESIDUE SO4 A 503
5AC5SOFTWARESER A:245 , ALA A:246BINDING SITE FOR RESIDUE SO4 A 504
6AC6SOFTWAREGLN A:226 , ARG A:229 , HOH A:644BINDING SITE FOR RESIDUE SO4 A 505
7AC7SOFTWAREARG A:55 , ARG A:62 , SER A:88 , LYS A:201BINDING SITE FOR RESIDUE MPD A 506
8AC8SOFTWAREGLY A:296 , GLY A:298 , CYS A:301 , GLU A:465 , SER A:466 , HIS A:467BINDING SITE FOR RESIDUE K A 507

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4R7J)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:272 -Asn A:273

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4R7J)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4R7J)

(-) Exons   (0, 0)

(no "Exon" information available for 4R7J)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:357
                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhh.eee...............ee.....ee...eee.......hhhhhhhhhhh..eeee....hhhhhhhhhhhhhh...hhhhh.............eeee...hhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhh..eeee........hhhhhh....hhhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhh..eeeehhhhhh........eee..eeeeeee...hhhhhh.......eeeee...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.eee.hhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r7j A   0 AMKIVKRALTFEDVLLRPGYSEVLPKEVKIHTKLTKNITLNMPLISAAMDTVTEHRAAIMMARLGGLGVIHKNMDIASQVREVKRVKKSEKKRKEYPDANKDNFGRLRVGAAIGVGQMDRVDALVEAGVDVVVLDSAHGHSKGIIDTVKAIKAKYPNLDLIAGNIATAAAAKALCEAGVDAVKVGIGPGSICTTRIVSGVGVPQISAIDECVEEANKFGVPVIADGGIKYSGDIAKALAVGASSVMIGSLLAGTDESPGELFTYQGRQYKSYRGMGSLGAMQKLVPEGIEGRVPYVGSIRSVVHQLLGGLRSSMGYVGAKDIEDFQKRAEFVEITTAGLKESHVHDVTITHEAPNYK 481
                                     9        19        29        39        49        59        69        79        89|      209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389 ||    414       424       434       444       454       464       474       
                                                                                                                    89|                                                                                                                                                                                            391|                                                                          
                                                                                                                    200                                                                                                                                                                                             407
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4R7J)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4R7J)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4R7J)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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    Gly A:272 - Asn A:273   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q0P9J4_CAMJE | Q0P9J4: 4mz1 4mz8

(-) Related Entries Specified in the PDB File

4mz1 THE SAME PROTEIN CO-CRYSTALLIZED WITH INHIBITOR P12
4mz8 THE SAME PROTEIN CO-CRYSTALLIZED WITH INHIBITOR C91 RELATED ID: CSGID-IDP90781 RELATED DB: TARGETTRACK