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(-) Description

Title :  CRYSTAL STRUCTURE OF CHAETOMIUM THERMOPHILUM NUP145N APD T994A MUTANT FUSED TO NUP145C N
 
Authors :  D. H. Lin, T. Stuwe, A. Hoelz
Date :  31 Dec 15  (Deposition) - 20 Apr 16  (Release) - 04 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A (1x),B (1x)
Keywords :  Nucleocytoplasmic Transport, Protein Transport, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. H. Lin, T. Stuwe, S. Schilbach, E. J. Rundlet, T. Perriches, G. Mobbs Y. Fan, K. Thierbach, F. M. Huber, L. N. Collins, A. M. Davenport, Y. E. Jeon, A. Hoelz
Architecture Of The Symmetric Core Of The Nuclear Pore.
Science V. 352 F1015 2016
PubMed-ID: 27081075  |  Reference-DOI: 10.1126/SCIENCE.AAF1015

(-) Compounds

Molecule 1 - NUCLEOPORIN NUP145
    Chains: A, B
    EC Number: 3.4.21.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: NUP145, CTHT_0042590
    Mutation: YES
    Organism Scientific: CHAETOMIUM THERMOPHILUM (STRAIN DSM 1495 / CBS 144.50 / IMI 039719)
    Organism Taxid: 759272
    Strain: DSM 1495 / CBS 144.50 / IMI 039719
    Synonym: NUCLEAR PORE PROTEIN NUP145

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): A (1x)B (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric Unit (1, 5)
No.NameCountTypeFull Name
1SO45Ligand/IonSULFATE ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 3 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:950 , ARG A:951 , GLY A:952 , ARG A:960 , HOH A:1256 , ARG B:951 , ARG B:967binding site for residue SO4 A 1101
2AC2SOFTWAREARG A:870 , ARG A:877 , ILE A:904 , ASN A:905 , LEU A:906 , ASP A:907 , HOH A:1207 , HOH A:1292 , HOH A:1321 , HOH A:1331binding site for residue SO4 A 1102
3AC3SOFTWAREARG B:870 , ARG B:877 , ILE B:904 , ASN B:905 , LEU B:906 , GLY B:958 , ARG B:959 , HOH B:1205binding site for residue SO4 B 1101
4AC4SOFTWAREARG A:951 , ARG A:967 , ARG B:951 , ARG B:963 , HOH B:1212 , HOH B:1225 , HOH B:1231 , HOH B:1282binding site for residue SO4 B 1102
5AC5SOFTWAREARG A:967 , ASN B:905 , ARG B:959 , ARG B:960 , HOH B:1318binding site for residue SO4 B 1103

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HB6)

(-) Cis Peptide Bonds  (2, 4)

Asymmetric Unit
No.Residues
1Ser A:863 -Pro A:864
2Ser B:863 -Pro B:864

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HB6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HB6)

(-) Exons   (0, 0)

(no "Exon" information available for 5HB6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee.hhhhhhh.hhhhhh.....eeee...eeeee.........hhhhh....eeee..eeee..hhhhh..........eeeee...........hhhhhhhhhhhhhh....eeeeee....eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5hb6 A 857 SGAYWMSPTADDIRAMNRMQRQRVVGFTVGRENVGSVQFKVPVDLSNINLDDLFGTIVILEPRSATVYPNAAKKPPMGKGLNVPALISLEHSWPRGGPTIKGRRLERHIERLKSIPDTTFESYDPETGVWAFSVEHFA 994
                                   866       876       886       896       906       916       926       936       946       956       966       976       986        


Chain B from PDB  Type:PROTEIN  Length:143
                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.hhhhhhhhhhhhhh.....eeee...eeeee..................eeee..eeee..hhhhh..........eeeee............hhhhhhhhhhhh.....eeeeee....eeeeee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hb6 B 857 SGAYWMSPTADDIRAMNRMQRQRVVGFTVGRENVGSVQFKVPVDLSNINLDDLFGTIVILEPRSATVYPNAAKKPPMGKGLNVPALISLEHSWPRGGPTIKGRRLERHIERLKSIPDTTFESYDPETGVWAFSVEHFATYGLG 999
                                   866       876       886       896       906       916       926       936       946       956       966       976       986       996
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HB6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HB6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HB6)

(-) Gene Ontology  (9, 9)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NU145_CHATD | G0SAK3: 5cww 5hb0 5hb5

(-) Related Entries Specified in the PDB File

5hax 5hay 5haz 5hb0 5hb1 5hb2 5hb3 5hb4 5hb5 5hb7 5hb8