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(-) Description

Title :  CRYSTAL STRUCTURE OF CHAETOMIUM THERMOPHILUM NIC96 SOL
 
Authors :  D. H. Lin, T. Stuwe, S. Schilbach, A. Hoelz
Date :  31 Dec 15  (Deposition) - 20 Apr 16  (Release) - 04 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym./Biol. Unit :  C
Keywords :  Nucleocytoplasmic Transport, Protein Transport, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. H. Lin, T. Stuwe, S. Schilbach, E. J. Rundlet, T. Perriches, G. Mobbs Y. Fan, K. Thierbach, F. M. Huber, L. N. Collins, A. M. Davenport, Y. E. Jeon, A. Hoelz
Architecture Of The Symmetric Core Of The Nuclear Pore.
Science V. 352 F1015 2016
PubMed-ID: 27081075  |  Reference-DOI: 10.1126/SCIENCE.AAF1015

(-) Compounds

Molecule 1 - NUCLEOPORIN NIC96
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: NIC96, CTHT_0008480
    Organism Scientific: CHAETOMIUM THERMOPHILUM (STRAIN DSM 1495 / CBS 144.50 / IMI 039719)
    Organism Taxid: 759272
    Strain: DSM 1495 / CBS 144.50 / IMI 039719
    Synonym: NUCLEAR PORE PROTEIN NIC96

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 23)

Asymmetric/Biological Unit (1, 23)
No.NameCountTypeFull Name
1MSE23Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5HB2)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HB2)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asp C:843 -Gly C:844

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HB2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HB2)

(-) Exons   (0, 0)

(no "Exon" information available for 5HB2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain C from PDB  Type:PROTEIN  Length:716
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.............hhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh................hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.....hhhhhhhhhhhhhhhh........hhhhhhhhhhhhh.............hhhhhhhhhhhh...............hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhhhhh..............eee.....eeehhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhheee.....eeehhhhhhhhhhh....hhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh...............................hhhhh...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5hb2 C  392 DRFLREKQAKLAEKIREFNDARQRGTPFYICRDLADLESKSGDRHGPHIVEAYRAVmEmVGEHPDAGEAPRERQFAKmYLDPNTQSANALAmRKQILKGATTFLEKQFWNEVNSLIAKYPQDANLGGLPDVVSKIKAYIRLRIARKTLVPDNVELQQINGEYVWAIVFYLLRAGFVTEAAQYVNSNQAHFRAIDRTFSGYINSYASSEERRLKRQmQDRCmSEYNQRIRNAPEGSIDPFRmACYKIIGRCDLSNRSLDGLQTDVNDWIWLQFNLARETDRSLELAGESYGLAELQASIREIGLKHFPKTAAEDTNGSFGmFFYLQILAGmFEQAIAYLYPFSYVDAVHFAIALTYYGLLRPVDAASAGNELLSHNTRSmPQINFGRmLGYYTRDFRAANPAAAVDYLVLICLNADEAAGGQQAQAALCHEALRELVLESREFSRLIGDIRPDGRRIRGVIEERGPLIALGQEDDFIRTITLQAASFADDNGRTTDAVLLYHLAEDYDTVVSIVSRALSEAISLEIGEDPmRLIPVKPRVTNAEGQVEEAAPGSSLSLAAIDDPVELAKAmmGmYERDHmFWQKIREPNRVACSVLLQmADIKSLVEQGRWAECLDKIRALDILPLTARGDPGTIRSYAARFPSLAQPVAINVPNLLmWTVLCCmRQRERLAGGQNESTARLmmDELKQmTVDLmAYTSQLRYRLPPHLHEALARAS 1110
                                   401       411       421       431       441      |451       461       471       481 |     491       501       511       521       531       541       551       561       571       581       591       601     | 611|      621       631|      641       651       661       671       681       691       701       711       721       731       741       751       761       771      |781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961| |    971       981       991      1001      1011      1021      1031      1041      1051   |  1061   || 1074 ||   1084   |  1094      1104      
                                                                                  448-MSE              469-MSE       483-MSE                                                                                                                     607-MSE|                 632-MSE                                                                        711-MSE   721-MSE                                          770-MSE 778-MSE                                                                                                                                        921-MSE                                 961-MSE    |                989-MSE                                                   1048-MSE  |      1065|      ||     |    |                      
                                                                                    450-MSE                                                                                                                                                           612-MSE                                                                                                                                                                                                                                                                                                                                                       962-MSE   |                                                                                 1055-MSE   1069      ||     |    |                      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      964-MSE |                                                                                                   1076-MSE  |    |                      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            970-MSE                                                                                                1077-MSE |    |                      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         1083-MSE|                      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              1088-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HB2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HB2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HB2)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asp C:843 - Gly C:844   [ RasMol ]  
 

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  5hb2
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  NIC96_CHATD | G0S024
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NIC96_CHATD | G0S024: 5cws 5hb3

(-) Related Entries Specified in the PDB File

5hax 5hay 5haz 5hb0 5hb1 5hb3 5hb4 5hb5 5hb6 5hb7 5hb8