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(-) Description

Title :  CRYSTAL STRUCTURE OF CHAETOMIUM THERMOPHILUM NUP145N APD
 
Authors :  D. H. Lin, T. Stuwe, A. Hoelz
Date :  31 Dec 15  (Deposition) - 20 Apr 16  (Release) - 04 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Nucleocytoplasmic Transport, Protein Transport, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. H. Lin, T. Stuwe, S. Schilbach, E. J. Rundlet, T. Perriches, G. Mobbs Y. Fan, K. Thierbach, F. M. Huber, L. N. Collins, A. M. Davenport, Y. E. Jeon, A. Hoelz
Architecture Of The Symmetric Core Of The Nuclear Pore.
Science V. 352 F1015 2016
PubMed-ID: 27081075  |  Reference-DOI: 10.1126/SCIENCE.AAF1015

(-) Compounds

Molecule 1 - NUCLEOPORIN NUP145
    Chains: A, B
    EC Number: 3.4.21.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: NUP145, CTHT_0042590
    Organism Scientific: CHAETOMIUM THERMOPHILUM (STRAIN DSM 1495 / CBS 144.50 / IMI 039719)
    Organism Taxid: 759272
    Strain: DSM 1495 / CBS 144.50 / IMI 039719
    Synonym: NUCLEAR PORE PROTEIN NUP145

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric Unit (1, 7)
No.NameCountTypeFull Name
1FLC7Ligand/IonCITRATE ANION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1FLC2Ligand/IonCITRATE ANION
Biological Unit 2 (1, 5)
No.NameCountTypeFull Name
1FLC5Ligand/IonCITRATE ANION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:94 , ARG A:103 , ARG A:106 , HIS A:107 , ARG A:110 , HOH A:301binding site for residue FLC A 201
2AC2SOFTWARESER A:6 , PRO A:7 , THR A:8 , ASP A:11 , ASN A:69 , ALA A:70 , ALA A:71 , HOH A:302 , HOH A:303 , HOH A:320 , HOH A:336binding site for residue FLC A 202
3AC3SOFTWAREARG B:103 , FLC B:205 , HOH B:301 , HOH B:305 , HOH B:313binding site for residue FLC B 201
4AC4SOFTWAREARG B:62 , HIS B:90 , TRP B:92binding site for residue FLC B 202
5AC5SOFTWAREHIS B:107 , ARG B:110 , HOH B:338 , HOH B:381 , HOH B:388binding site for residue FLC B 203
6AC6SOFTWARETHR B:98 , ILE B:99 , ARG B:103binding site for residue FLC B 204
7AC7SOFTWAREGLY B:1 , TYR B:3 , ARG B:30 , ARG B:102 , FLC B:201 , HOH B:302 , HOH B:304 , HOH B:325 , HOH B:378binding site for residue FLC B 205

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HB5)

(-) Cis Peptide Bonds  (2, 4)

Asymmetric Unit
No.Residues
1Ser A:6 -Pro A:7
2Ser B:6 -Pro B:7

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HB5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HB5)

(-) Exons   (0, 0)

(no "Exon" information available for 5HB5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:139
                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee.hhhhhhh.hhhhhh.....eeee...eeeee..................eeee..eeee..hhhhh..........eeeee...........hhhhhhhhhhhhhh....eeeeee....eeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hb5 A  -2 PHMGAYWMSPTADDIRAMNRMQRQRVVGFTVGRENVGSVQFKVPVDLSNINLDDLFGTIVILEPRSATVYPNAAKKPPMGKGLNVPALISLEHSWPRGGPTIKGRRLERHIERLKSIPDTTFESYDPETGVWAFSVEHF 136
                                     7        17        27        37        47        57        67        77        87        97       107       117       127         


Chain B from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee.hhhhhhh...hhhhhh...eeee...eeeee..................eeee..eeee..hhhhh..........eeeee...........hhhhhhhhhhhhhh....eeeeee....eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hb5 B  -3 GPHMGAYWMSPTADDIRAMNRMQRQRVVGFTVGRENVGSVQFKVPVDLSNINLDDLFGTIVILEPRSATVYPNAAKKPPMGKGLNVPALISLEHSWPRGGPTIKGRRLERHIERLKSIPDTTFESYDPETGVWAFSVEHF 136
                                     6        16        26        36        46        56        66        76        86        96       106       116       126       136
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HB5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HB5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HB5)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NU145_CHATD | G0SAK3: 5cww 5hb0 5hb6

(-) Related Entries Specified in the PDB File

5hax 5hay 5haz 5hb0 5hb1 5hb2 5hb3 5hb4 5hb6 5hb7 5hb8