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(-) Description

Title :  CRYSTAL STRUCTURE OF CHAETOMIUM THERMOPHILUM NUP170 NTD-NUP53 COMPLEX
 
Authors :  D. H. Lin, G. Mobbs, A. Hoelz
Date :  31 Dec 15  (Deposition) - 20 Apr 16  (Release) - 04 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Nucleocytoplasmic Transport, Protein Transport, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. H. Lin, T. Stuwe, S. Schilbach, E. J. Rundlet, T. Perriches, G. Mobbs Y. Fan, K. Thierbach, F. M. Huber, L. N. Collins, A. M. Davenport, Y. E. Jeon, A. Hoelz
Architecture Of The Symmetric Core Of The Nuclear Pore.
Science V. 352 F1015 2016
PubMed-ID: 27081075  |  Reference-DOI: 10.1126/SCIENCE.AAF1015

(-) Compounds

Molecule 1 - NUCLEOPORIN NUP170
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: NUP170, CTHT_0036270
    Organism Scientific: CHAETOMIUM THERMOPHILUM (STRAIN DSM 1495 / CBS 144.50 / IMI 039719)
    Organism Taxid: 759272
    Strain: DSM 1495 / CBS 144.50 / IMI 039719
    Synonym: NUCLEAR PORE PROTEIN NUP170
 
Molecule 2 - NUCLEOPORIN NUP53
    Chains: B
    Engineered: YES
    Organism Scientific: CHAETOMIUM THERMOPHILUM (STRAIN DSM 1495 / CBS 144.50 / IMI 039719)
    Organism Taxid: 759272
    Synonym: NUCLEAR PORE PROTEIN NUP53
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2GOL1Ligand/IonGLYCEROL
3PO44Ligand/IonPHOSPHATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:117 , SER A:118 , ARG A:444 , LYS A:816 , LYS A:820 , HOH A:1004binding site for residue PO4 A 901
2AC2SOFTWARESER A:357 , ARG A:360 , HOH A:1018 , HOH A:1020binding site for residue PO4 A 902
3AC3SOFTWAREARG A:103 , GLY A:105 , ALA A:106 , PHE A:431 , HOH A:1013 , HOH A:1138 , HOH A:1231binding site for residue PO4 A 903
4AC4SOFTWAREARG A:243 , GLY A:245 , PRO A:370 , LEU A:371 , THR A:400 , ARG A:460 , ASP A:463 , HOH A:1009 , HOH A:1029 , HOH A:1122binding site for residue PO4 A 904
5AC5SOFTWAREASP A:99 , CYS A:102 , ARG A:103 , PRO A:104 , GLN A:430 , HOH A:1111binding site for residue EDO A 905
6AC6SOFTWAREGLY A:244 , GLY A:245 , ARG A:460 , HOH A:1228 , HOH A:1235 , HOH A:1267binding site for residue GOL A 906

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HAX)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Asp A:463 -Pro A:464
2Ser A:472 -Pro A:473
3Gln A:503 -Pro A:504
4Leu B:354 -Pro B:355

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HAX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HAX)

(-) Exons   (0, 0)

(no "Exon" information available for 5HAX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:698
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh...hhhhhh..eee...eee........eeeeeeee.hhhhhhhhhh....eeeeee....eeeeee..eeeeee........eee......eeeeeee............eeeeeee..eeeeeeeeee.......eeeee....eee.......eeee.....eeee.......eeeee..........eeeee............eeeeeeehhh.eeeeee....eeeee.......eeeeeehhhhhhhhhhhh............eeeeee........eeeeeee....eeeeeee...........eeeeeeee.........................eeeeeee...eeeeee.......eeeeeeehhhhhhhh.hhhhh...eeeeeee......eeeeee.........hhhhhh.hhhhh......eeeeee..eeeeeee.hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhh.......ee...ee..hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hax A  74 DLPPVAKAAQVVNQTLQLDDSYPDLDSYCRPGASSDYEMQSSDSSWAPFHVVRHHNIPDKVFEHLNAGEVFTKLGLFAEIGYAWASIDSSLFLWDYTHPNPELIGYEEATHTITAVALVPPKPGVFVKTITHVLVVATTSEIILLGVSATPTPSGSKSLTLYSTRMSVHRGGSDVSFIVGTKDGRIFLGGESDTDIHEIFYQQEERWFSSRCGKINHSHPFGSRQQEWLRGLYVDDTRNLLYSLSNRSTIRTYHMEGPEKLTKVIEKDKTSCLRDFAHMADSSPLFTDKTNIVALSPIPATEASKLHLMALTDTGCRLFLSATSSASYTSLAPQSMQLQFVKFPPRESPTRIRTLSQLDKTSRALDPSALGFRFSPGYFFDVVRKHPNQDMLFVSAPDTGRIKVTQPASALKYFEQGTWIELENGNRTIEIGLTTAPFAAAKQPLGFGNELAVQFDQVPGEFAVLTNTGVHIVRRRRLVDIFAKALGNCVSASDDALEREVRKFINQYGRVETIAAALAVACGQGSDLMDRNTENLARAAFIEYGGQPRLASVRLSSRHDALALYLTRLVRTLWKAKVVQVDISSTIPTSKLVTIQENVERLRNFLEANKSTIQGLAPPDIANQKEHQALHALQKLMESISEGISFVLMLFDERVSDIYARLDAVSQQQLKDLTYEQLFSQTPGKELAKVLVKAIVNR 825
                                    83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       306       316       326       336       346       356       366       376       386       396       406       421       431       441    || 457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       634       644       654||     674       684       694||     708       718       728       747       757       767       777       787       797       807       817        
                                                                                                                                                                                                                                                    292|                                                                                                          415|                      446|                                                                                                                                                                         625|                   655|                          695|                                  737|                                                                              
                                                                                                                                                                                                                                                     306                                                                                                           421                       453                                                                                                                                                                          633                    666                           700                                   747                                                                              


Chain B from PDB  Type:PROTEIN  Length:14
                                              
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author ....eehhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                 5hax B 342 RKAKLLPMEEALLP 355
                                   351
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HAX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HAX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HAX)

(-) Gene Ontology  (10, 18)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asp A:463 - Pro A:464   [ RasMol ]  
    Gln A:503 - Pro A:504   [ RasMol ]  
    Leu B:354 - Pro B:355   [ RasMol ]  
    Ser A:472 - Pro A:473   [ RasMol ]  
 

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  5hax
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  NU170_CHATD | G0S7B6
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  NUP53_CHATD | G0S156
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NU170_CHATD | G0S7B6: 5hay 5haz 5hb0 5hb1
        NUP53_CHATD | G0S156: 5hb3 5hb7 5hb8

(-) Related Entries Specified in the PDB File

5hay 5haz 5hb0 5hb1 5hb2 5hb3 5hb4 5hb5 5hb6 5hb7 5hb8