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(-) Description

Title :  CRYSTAL STRUCTURE OF THE FLAGELLAR CAP PROTEIN FLID D2-D3 DOMAINS FROM SALMONELLA TYPHIMURIUM
 
Authors :  W. S. Song, S. Y. Cho, H. J. Hong, S. I. Yoon
Date :  09 Nov 16  (Deposition) - 22 Feb 17  (Release) - 05 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Bacterial Flagellar Cap Protein, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. S. Song, S. Y. Cho, H. J. Hong, S. C. Park, S. I. Yoon
Self-Oligomerizing Structure Of The Flagellar Cap Protein Flid And Its Implication In Filament Assembly.
J. Mol. Biol. V. 429 847 2017
PubMed-ID: 28179186  |  Reference-DOI: 10.1016/J.JMB.2017.02.001

(-) Compounds

Molecule 1 - FLAGELLAR HOOK-ASSOCIATED PROTEIN 2
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 71-268
    Gene: FLID
    Organism Scientific: SALMONELLA TYPHIMURIUM
    Organism Taxid: 90371
    Synonym: HAP2,FLAGELLAR CAP PROTEIN

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit : ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5H5T)

(-) Sites  (0, 0)

(no "Site" information available for 5H5T)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5H5T)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Ala A:246 -Pro A:247
2Ala B:246 -Pro B:247
3Ala C:246 -Pro C:247
4Ala D:246 -Pro D:247
5Ala E:246 -Pro E:247

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5H5T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5H5T)

(-) Exons   (0, 0)

(no "Exon" information available for 5H5T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:196
                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....eeeee......eeeeeeeee...eeeeee..................eeeeee.......eeeee.....hhhhhhhhhhhh...eeeeeeeee..eeeeeeeeee.hhhh.eeeee.hhhhhhhhhee....ee.eeeee....eeeee..eeeee...ee......eeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h5t A  72 STVASSTTEDLKVSTTAGAAAGTYKINVTQLAAAQSLATKTTFATTKEQLGDTSVTSRTIKIEQPGRKEPLEIKLDKGDTSMEAIRDAINDADSGIAASIVKVKENEFQLVLTANSGTDNTMKITVEGDTKLNDLLAYDSTTNTGNMQELVKAENAKLNVNGIDIERQSNTVTDAPQGITLTLTKKVTDATVTVTK 267
                                    81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261      


Chain B from PDB  Type:PROTEIN  Length:195
                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....eeeee......eeeeeeeee...eeeeee.................eeeeeee.......eeeeee....hhhhhhhhhhhhh...eeeeeeee..eeeeeeeeee.hhhh.eeeee.hhhhhhhhhee....ee.eeeee....eeeee..eeeee...eee.....eeeee...eeeeeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h5t B  72 STVASSTTEDLKVSTTAGAAAGTYKINVTQLAAAQSLATKTTFATTKEQLGDTSVTSRTIKIEQPGRKEPLEIKLDKGDTSMEAIRDAINDADSGIAASIVKVKENEFQLVLTANSGTDNTMKITVEGDTKLNDLLAYDSTTNTGNMQELVKAENAKLNVNGIDIERQSNTVTDAPQGITLTLTKKVTDATVTVT 266
                                    81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261     


Chain C from PDB  Type:PROTEIN  Length:196
                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....eeeee......eeeeeeeee.....eeee...................eeeee.......eeee......hhhhhhhhhhhhh..eeeeeeeee..eeeeeeee..hhhhh.eeeee.hhhhhhhhhee....ee.eeeee....eeeee..eeeee...ee......eeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h5t C  72 STVASSTTEDLKVSTTAGAAAGTYKINVTQLAAAQSLATKTTFATTKEQLGDTSVTSRTIKIEQPGRKEPLEIKLDKGDTSMEAIRDAINDADSGIAASIVKVKENEFQLVLTANSGTDNTMKITVEGDTKLNDLLAYDSTTNTGNMQELVKAENAKLNVNGIDIERQSNTVTDAPQGITLTLTKKVTDATVTVTK 267
                                    81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261      


Chain D from PDB  Type:PROTEIN  Length:193
                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee....eeee.......eeeeeeeee.....eeee..................eeeeee.......eeeee.....hhhhhhhhhhhhh..eeeeeeeee..eeeeeeee..hhhhh.eeeee.hhhhhhhhhee....ee.eeeee....eeeee..eeeee...ee.......eeee...eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h5t D  74 VASSTTEDLKVSTTAGAAAGTYKINVTQLAAAQSLATKTTFATTKEQLGDTSVTSRTIKIEQPGRKEPLEIKLDKGDTSMEAIRDAINDADSGIAASIVKVKENEFQLVLTANSGTDNTMKITVEGDTKLNDLLAYDSTTNTGNMQELVKAENAKLNVNGIDIERQSNTVTDAPQGITLTLTKKVTDATVTVT 266
                                    83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263   


Chain E from PDB  Type:PROTEIN  Length:196
                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....eeeee......eeeeeeeee...eeeeee..................eeeeee.......eeeee.....hhhhhhhhhhhhh..eeeeeeeee..eeeeeeeeee.hhhh.eeeee.hhhhhhhhhee....ee.eeeee....eeeee..eeeee...ee......eeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h5t E  72 STVASSTTEDLKVSTTAGAAAGTYKINVTQLAAAQSLATKTTFATTKEQLGDTSVTSRTIKIEQPGRKEPLEIKLDKGDTSMEAIRDAINDADSGIAASIVKVKENEFQLVLTANSGTDNTMKITVEGDTKLNDLLAYDSTTNTGNMQELVKAENAKLNVNGIDIERQSNTVTDAPQGITLTLTKKVTDATVTVTK 267
                                    81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5H5T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5H5T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5H5T)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
(no "Sites" information available for 5h5t)
 
  Cis Peptide Bonds
    Ala A:246 - Pro A:247   [ RasMol ]  
    Ala B:246 - Pro B:247   [ RasMol ]  
    Ala C:246 - Pro C:247   [ RasMol ]  
    Ala D:246 - Pro D:247   [ RasMol ]  
    Ala E:246 - Pro E:247   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FLID_SALTY | P16328: 5krw

(-) Related Entries Specified in the PDB File

5h5v 5h5w