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(-) Description

Title :  CRYSTAL STRUCTURE OF THE FLAGELLAR CAP PROTEIN FLID D1-D2-D3 DOMAINS FROM ESCHERICHIA COLI
 
Authors :  W. S. Song, S. Y. Cho, H. J. Hong, S. I. Yoon
Date :  09 Nov 16  (Deposition) - 22 Feb 17  (Release) - 05 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Bacterial Flagellar Cap Protein, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. S. Song, S. Y. Cho, H. J. Hong, S. C. Park, S. I. Yoon
Self-Oligomerizing Structure Of The Flagellar Cap Protein Flid And Its Implication In Filament Assembly.
J. Mol. Biol. V. 429 847 2017
PubMed-ID: 28179186  |  Reference-DOI: 10.1016/J.JMB.2017.02.001

(-) Compounds

Molecule 1 - FLAGELLAR HOOK-ASSOCIATED PROTEIN 2
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 43-416
    Gene: FLID
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: HAP2,FLAGELLAR CAP PROTEIN

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 24)

Asymmetric/Biological Unit (1, 24)
No.NameCountTypeFull Name
1MSE24Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5H5V)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5H5V)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5H5V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5H5V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5H5V)

(-) Exons   (0, 0)

(no "Exon" information available for 5H5V)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:352
                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee....eeeee......eeeeeeeee.....eeee...............eeeee........eeeeehhhhhhhhhhhhhhhhhh..eeeeeee.....eeeeeee...hhhhh..eeee.hhhhhhhhh.........eeeee....eeeee..eeeee...ee......eeeee.......eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh........hhhhh.eee......eeehhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh..hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h5v A  44 LSAYGTLKSALTTFQTANTALSKADLFSATSTTSSTTAFSATTAGNAIAGKYTISVTHLAQAQTLTTRTTRDDTKTAIATSDSKLTIQQGGDKDPITIDISAANSSLSGIRDAINNAKAGVSASIINVGNGEYRLSVTSNDTGLDNAmTLSVSGDDALQSFmGYDASASSNGmEVSVAAQNAQLTVNNVAIENSSNTISDALENITLNLNDVTTGNQTLTITQDTSKAQTAIKDWVNAYNSLIDTFSSLTKALLGDSTLRTIQTQLKSmLSNTVSSSSYKTLAQIGITTDPSDGKLELDADKLTAALKKDASGVGALIVGDGKKTGITTTIGSNLTSWLSTTGIIKAATDGV 411
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203 |     213  |    223       233       243       253       263       273       283       293||     319       329       339       349       359       369       379       389       399       409  
                                                                                                                                                                             191-MSE       205-MSE    216-MSE                                                                       294|              328-MSE                                                                               
                                                                                                                                                                                                                                                                                     311                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:339
                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhh.eeeee....eeeee......eeeeeeeee.....eeee...............eeeeeee......eeeeehhhhhhhhhhhhhhhhh...eeeeeee.....eeeeeee...hhhh.eeeeee.hhhhhhhhh.........eeeee....eeeee..eeeee...ee......eeeee.......eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.........hhhhh.ee......ee.hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh..hhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h5v B  48 GTLKSALTTFQTANTALSKADLFSATSTTSSTTAFSATTAGNAIAGKYTISVTHLAQAQTLTTRTTRDDTKTAIATSDSKLTIQQGGDKDPITIDISAANSSLSGIRDAINNAKAGVSASIINVGNGEYRLSVTSNDTGLDNAmTLSVSGDDALQSFmGYDASASSNGmEVSVAAQNAQLTVNNVAIENSSNTISDALENITLNLNDVTTGNQTLTITQDTSKAQTAIKDWVNAYNSLIDTFSSDSTLRTIQTQLKSmLSNTVSSSSYKTLAQIGITTDPSDGKLELDADKLTAALKKDASGVGALIVGDGKKTGITTTIGSNLTSWLSTTGIIKAATD 409
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187   |   197       207       217       227       237       247       257       267       277       287   ||  320       330       340       350       360       370       380       390       400         
                                                                                                                                                                         191-MSE       205-MSE    216-MSE                                                                    291|          328-MSE                                                                             
                                                                                                                                                                                                                                                                              315                                                                                              


Chain C from PDB  Type:PROTEIN  Length:356
                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee....eeeee......eeeeeeeee.....eeee...............eeeee........eeeeehhhhhhhhhhhhhhhhh...eeeeeee.....eeeeeee...hhhhh..eeee.hhhhhhhhh.........eeeee....eeeee..eeeee...ee......eeeee.......eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh.........hhhh.eee......eeehhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh..hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h5v C  43 KLSAYGTLKSALTTFQTANTALSKADLFSATSTTSSTTAFSATTAGNAIAGKYTISVTHLAQAQTLTTRTTRDDTKTAIATSDSKLTIQQGGDKDPITIDISAANSSLSGIRDAINNAKAGVSASIINVGNGEYRLSVTSNDTGLDNAmTLSVSGDDALQSFmGYDASASSNGmEVSVAAQNAQLTVNNVAIENSSNTISDALENITLNLNDVTTGNQTLTITQDTSKAQTAIKDWVNAYNSLIDTFSSLTKYNGALLGDSTLRTIQTQLKSmLSNTVSSSSYKTLAQIGITTDPSDGKLELDADKLTAALKKDASGVGALIVGDGKKTGITTTIGSNLTSWLSTTGIIKAATDGV 411
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202  |    212   |   222       232       242       252       262       272       282       292  ||   315       325  |    335       345       355       365       375       385       395       405      
                                                                                                                                                                              191-MSE       205-MSE    216-MSE                                                                        295|                328-MSE                                                                               
                                                                                                                                                                                                                                                                                       309                                                                                                      


Chain D from PDB  Type:PROTEIN  Length:345
                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee....eeeee......eeeeeeeee.....eeee...............eeeeeee......eeeeehhhhhhhhhhhhhhhhh...eeeeeee.....eeeeeee...hhhh.eeeeee.hhhhhhhhh.........eeeee....eeeee..eeeee...ee......eeeee.......eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..............eee......eeehhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh...hhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h5v D  43 KLSAYGTLKSALTTFQTANTALSKADLFSATSTTSSTTAFSATTAGNAIAGKYTISVTHLAQAQTLTTRTTRDDTKTAIATSDSKLTIQQGGDKDPITIDISAANSSLSGIRDAINNAKAGVSASIINVGNGEYRLSVTSNDTGLDNAmTLSVSGDDALQSFmGYDASASSNGmEVSVAAQNAQLTVNNVAIENSSNTISDALENITLNLNDVTTGNQTLTITQDTSKAQTAIKDWVNAYNSLIDTFSSLTKTLRTIQTQLKSmLSNTVSSSSYKTLAQIGITTDPSDGKLELDADKLTAALKKDASGVGALIVGDGKKTGITTTIGSNLTSWLSTTGIIKAATD 409
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202  |    212   |   222       232       242       252       262       272       282       292 ||    324   |   334       344       354       364       374       384       394       404     
                                                                                                                                                                              191-MSE       205-MSE    216-MSE                                                                       294|        328-MSE                                                                             
                                                                                                                                                                                                                                                                                      317                                                                                            


Chain E from PDB  Type:PROTEIN  Length:299
                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.eeeee....eeeee......eeeeeeeee.....eeee...............eeeee........eeeeehhhhhhhhhhhhhhhhhh..eeeeeee.....eeeeeee...hhhhh..eeee.hhhhhhhhh.........eeeee....eeeee..eeeee...ee......eeeee.......eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h5v E  54 LTTFQTANTALSKADLFSATSTTSSTTAFSATTAGNAIAGKYTISVTHLAQAQTLTTRTTRDDTKTAIATSDSKLTIQQGGDKDPITIDISAANSSLSGIRDAINNAKAGVSASIINVGNGEYRLSVTSNDTGLDNAmTLSVSGDDALQSFmGYDASASSNGmEVSVAAQNAQLTVNNVAIENSSNTISDALENITLNLNDVTTGNQTLTITQDTSKAQTAIKDWVNAYNSLIDTFSSLDSTLRTIQTQLKSmLSTAALKKDASGVGALIVGDGKKTGITTTIGSNLTSWLSTTGIIKA 406
                                    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203 |     213  |    223       233       243       253       263       273       283       315       325  | || 367       377       387       397         
                                                                                                                                                                   191-MSE       205-MSE    216-MSE                                                                     292|          328-MSE                                          
                                                                                                                                                                                                                                                                         315            330|                                           
                                                                                                                                                                                                                                                                                         363                                           


Chain F from PDB  Type:PROTEIN  Length:330
                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh.eeeee....eeeee......eeeeeeeee.....eeee...............eeeeeee......eeeeehhhhhhhhhhhhhhhhh...eeeeeee.....eeeeeee...hhhh.eeeeee.hhhhhhhhh.........eeeee....eeeee..eeeee...ee......eeeee.......eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.........hhhh.eee......eeehhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5h5v F  50 LKSALTTFQTANTALSKADLFSATSTTSSTTAFSATTAGNAIAGKYTISVTHLAQAQTLTTRTTRDDTKTAIATSDSKLTIQQGGDKDPITIDISAANSSLSGIRDAINNAKAGVSASIINVGNGEYRLSVTSNDTGLDNAmTLSVSGDDALQSFmGYDASASSNGmEVSVAAQNAQLTVNNVAIENSSNTISDALENITLNLNDVTTGNQTLTITQDTSKAQTAIKDWVNAYNSLIDTFSSLDSTLRTIQTQLKSmLSNTVSSSSYKTLAQIGITTDPSDGKLELDADKLTAALKKDASGVGALIVGDGKKTGITTTIGSNLTSWLSTT 401
                                    59        69        79        89        99       109       119       129       139       149       159       169       179       189 |     199     | 209      |219       229       239       249       259       269       279       289  ||   321      |331       341       351       361       371       381       391       401
                                                                                                                                                                       191-MSE       205-MSE    216-MSE                                                                     292|          328-MSE                                                                     
                                                                                                                                                                                                                                                                             315
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5H5V)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5H5V)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5H5V)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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        FLID_ECOLI | P24216: 5h5w

(-) Related Entries Specified in the PDB File

5h5s 5h5w