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(-) Description

Title :  CRYSTAL STRUCTURE OF FRUCTOKINASE FROM VIBRIO CHOLERAE O395 IN FRUCTOSE, ADP AND CALCIUM ION BOUND FORM
 
Authors :  R. Paul, S. Nath, U. Sen
Date :  28 Nov 15  (Deposition) - 30 Nov 16  (Release) - 30 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Kinase, Fructose, Adp, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Paul, S. Nath, U. Sen
Crystal Structure Of Fructokinase From Vibrio Cholerae O395 In Apo Form
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FRUCTOKINASE
    Chains: A
    EC Number: 2.7.1.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PET-28A+
    Gene: CSCK, VC0395_0600
    Organism Scientific: VIBRIO CHOLERAE SEROTYPE O1 (STRAIN ATCC 39541 / CLASSICAL OGAWA 395 / O395)
    Organism Taxid: 345073
    Strain: ATCC 39541 / CLASSICAL OGAWA 395 / O395

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric Unit (4, 4)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2CA1Ligand/IonCALCIUM ION
3FRU1Ligand/IonFRUCTOSE
4NA1Ligand/IonSODIUM ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2CA-1Ligand/IonCALCIUM ION
3FRU2Ligand/IonFRUCTOSE
4NA-1Ligand/IonSODIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:26 , ASP A:30 , GLY A:45 , ALA A:46 , ASN A:49 , VAL A:101 , PHE A:113 , PHE A:115 , ARG A:176 , ASP A:266 , HOH A:573 , HOH A:671binding site for residue FRU A 401
2AC2SOFTWARETHR A:234 , GLY A:236 , GLY A:239 , LYS A:254 , ALA A:255 , VAL A:256 , PRO A:258 , THR A:261 , THR A:262 , GLY A:263 , ALA A:264 , GLY A:265 , PHE A:268 , ASN A:296 , GLY A:299 , ALA A:300 , CA A:403 , HOH A:501 , HOH A:504 , HOH A:505 , HOH A:514 , HOH A:515 , HOH A:530 , HOH A:573 , HOH A:674 , HOH A:680binding site for residue ADP A 402
3AC3SOFTWAREASN A:174 , ADP A:402 , HOH A:501 , HOH A:555 , HOH A:573 , HOH A:589 , HOH A:611binding site for residue CA A 403
4AC4SOFTWAREALA A:302 , GLN A:305 , GLY A:307 , HOH A:546 , HOH A:661binding site for residue NA A 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5F0Z)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys A:118 -Pro A:119
2Gln A:149 -Pro A:150

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5F0Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5F0Z)

(-) Exons   (0, 0)

(no "Exon" information available for 5F0Z)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:308
                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee...eeeeee.....eeeeeehhhhhhhhhhhhh...eeeeeeee.hhhhhhhhhhhhhh..eeeeeeee.....eeeee....hhhh.eee....hhhhhhhhhhh.......eeeee.hhhh..hhhhhhhhhhhhhhhhh.eeeee...hhhhh.hhhhhhhhhhhhhh...eeeeehhhhhhhhh..hhhhhhhhhhhhh..eeeee.hhh.eeeee..eeeee...........hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f0z A  16 DSMSRVWLTGDAVVDLIPDGQQHYLKCPGGAPANVAVAIARLSGRSAFFGRVGNDPFGRFMQQTLTDEQVDCQHLHFDPVHRTSTVVVDLDEHGERSFTFMVKPSADQFLQLSDIPSFQKGEWLHVCSIALANQPSRSSTFAAIAQMKEVGGYVSFDPNLREEVWSEPQELQATVMRAVGLADVVKFSEEELQFLTGTQSIEEGLQAIADFQIPLVVVTLGAKGALVATPNSQQIVSGKAVKPIDTTGAGDAFVGGLLYRLSVAQDWHNQATILDAVKWANGCGALATTQKGAMTALPNQAALYAFLE 323
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315
   Legend:   → Mismatch (orange background)
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5F0Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5F0Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5F0Z)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5F0Z)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        A0A0H3AER7_V | A0A0H3AER7: 5ey7 5eyn 5f11

(-) Related Entries Specified in the PDB File

5ey7 5EY7 CONTAINS THE SAME PROTEIN IN APO FORM.
5eyn 5EYN COTAINS THE SAME PROTEIN IN FRUCTOSE, ADP, BEF3 BOUND FORM.
5f11