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(-) Description

Title :  CRYSTAL STRUCTURE OF FRUCTOKINASE FROM VIBRIO CHOLERAE O395 IN FRUCTOSE BOUND FORM
 
Authors :  R. Paul, S. Nath, U. Sen
Date :  28 Nov 15  (Deposition) - 30 Nov 16  (Release) - 30 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Kinase, Fructose, Sodium, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Paul, S. Nath, U. Sen
Crystal Structure Of Fructokinase From Vibrio Cholerae O395 In Apo Form
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FRUCTOKINASE
    Chains: A
    EC Number: 2.7.1.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PET-28A+
    Gene: CSCK, VC0395_0600
    Organism Scientific: VIBRIO CHOLERAE SEROTYPE O1 (STRAIN ATCC 39541 / CLASSICAL OGAWA 395 / O395)
    Organism Taxid: 345073
    Strain: ATCC 39541 / CLASSICAL OGAWA 395 / O395

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1FRU1Ligand/IonFRUCTOSE
2NA1Ligand/IonSODIUM ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1FRU2Ligand/IonFRUCTOSE
2NA-1Ligand/IonSODIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:26 , VAL A:28 , ASP A:30 , GLY A:45 , ALA A:46 , ASN A:49 , PHE A:113 , ARG A:176 , ASP A:266 , HOH A:543binding site for residue FRU A 401
2AC2SOFTWAREASP A:260 , THR A:262 , ALA A:302 , GLN A:305 , GLY A:307 , HOH A:566binding site for residue NA A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5F11)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys A:118 -Pro A:119
2Gln A:149 -Pro A:150

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5F11)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5F11)

(-) Exons   (0, 0)

(no "Exon" information available for 5F11)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:308
                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee...eeeeee.....eeeeeehhhhhhhhhhhhh...eeeeeeee.hhhhhhhhhhhhhh..eeeeeeee.....eeeee....hhhh.eee....hhhhhhhhhhh.......eeeee.hhhh..hhhhhhhhhhhhhhhhh.eeeee...hhhhh.hhhhhhhhhhhhhh...eeeeehhhhhhhh...hhhhhhhhhhhhh..eeeee.hhh.eeeee..eeeee...........hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f11 A  16 DSMSRVWLTGDAVVDLIPDGQQHYLKCPGGAPANVAVAIARLSGRSAFFGRVGNDPFGRFMQQTLTDEQVDCQHLHFDPVHRTSTVVVDLDEHGERSFTFMVKPSADQFLQLSDIPSFQKGEWLHVCSIALANQPSRSSTFAAIAQMKEVGGYVSFDPNLREEVWSEPQELQATVMRAVGLADVVKFSEEELQFLTGTQSIEEGLQAIADFQIPLVVVTLGAKGALVATPNSQQIVSGKAVKPIDTTGAGDAFVGGLLYRLSVAQDWHNQATILDAVKWANGCGALATTQKGAMTALPNQAALYAFLE 323
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5F11)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5F11)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5F11)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5F11)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A0H3AER7_V | A0A0H3AER7: 5ey7 5eyn 5f0z

(-) Related Entries Specified in the PDB File

5ey7 5EY7 CONTAINS SAME PROTEIN IN APO FORM
5eyn 5EYN CONTAINS SAME PROTEIN IN FRUCTOSE+ADP+BEF3 +CALCIUM BOUND FORM
5f0z 5F0Z CONTAINS SAME PROTEIN IN FRUCTOSE+ADP +CALCIUM BOUND FORM