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(-) Description

Title :  CRYSTAL STRUCTURE OF FRUCTOKINASE FROM VIBRIO CHOLERAE O395 IN FRUCTOSE, ADP, BERYLLIUM TRIFLUORIDE AND CALCIUM ION BOUND FORM
 
Authors :  R. Paul, S. Nath, U. Sen
Date :  25 Nov 15  (Deposition) - 30 Nov 16  (Release) - 30 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.29
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Transferase, Kinase, Fructose (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Paul, S. Nath, U. Sen
Crystal Structure Of Fructokinase From Vibrio Cholerae O395 In Apo Form
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FRUCTOKINASE
    Chains: A
    EC Number: 2.7.1.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: CSCK, VC0395_0600
    Organism Scientific: VIBRIO CHOLERAE SEROTYPE O1 (STRAIN ATCC 39541 / CLASSICAL OGAWA 395 / O395)
    Organism Taxid: 345073
    Strain: ATCC 39541 / CLASSICAL OGAWA 395 / O395

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 5)

Asymmetric Unit (5, 5)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2BEF1Ligand/IonBERYLLIUM TRIFLUORIDE ION
3CA1Ligand/IonCALCIUM ION
4FRU1Ligand/IonFRUCTOSE
5NA1Ligand/IonSODIUM ION
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2BEF2Ligand/IonBERYLLIUM TRIFLUORIDE ION
3CA-1Ligand/IonCALCIUM ION
4FRU2Ligand/IonFRUCTOSE
5NA-1Ligand/IonSODIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:26 , ASP A:30 , GLY A:45 , ALA A:46 , ASN A:49 , VAL A:101 , PHE A:113 , PHE A:115 , ARG A:176 , ASP A:266 , BEF A:403 , HOH A:654binding site for residue FRU A 401
2AC2SOFTWAREASN A:174 , BEF A:403 , ADP A:404 , HOH A:501 , HOH A:566 , HOH A:607 , HOH A:619binding site for residue CA A 402
3AC3SOFTWAREASN A:174 , ARG A:176 , THR A:261 , GLY A:263 , ALA A:264 , GLY A:265 , ASP A:266 , FRU A:401 , CA A:402 , ADP A:404binding site for residue BEF A 403
4AC4SOFTWAREHIS A:108 , THR A:234 , GLY A:236 , ALA A:237 , GLY A:239 , LYS A:254 , ALA A:255 , VAL A:256 , THR A:261 , GLY A:263 , ALA A:264 , GLY A:265 , PHE A:268 , ASN A:296 , GLY A:299 , ALA A:300 , CA A:402 , BEF A:403 , HOH A:501 , HOH A:641 , HOH A:684 , HOH A:735binding site for residue ADP A 404
5AC5SOFTWAREALA A:302 , GLN A:305 , GLY A:307 , HOH A:609 , HOH A:655binding site for residue NA A 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EYN)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys A:118 -Pro A:119
2Gln A:149 -Pro A:150

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EYN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EYN)

(-) Exons   (0, 0)

(no "Exon" information available for 5EYN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:306
                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee...eeeeee.....eeeeeehhhhhhhhhhhhh...eeeeeeee.hhhhhhhhhhhhhh..eeeeeeee.....eeeee....hhhh.eee....hhhhhhhhhhh.......eeeee.hhhh..hhhhhhhhhhhhhhhhh.eeeee...hhhhh.hhhhhhhhhhhhhh...eeeeehhhhhhhhh..hhhhhhhhhhhhh..eeeee.hhh.eeeee..eeeee...........hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5eyn A  18 MSRVWLTGDAVVDLIPDGQQHYLKCPGGAPANVAVAIARLSGRSAFFGRVGNDPFGRFMQQTLTDEQVDCQHLHFDPVHRTSTVVVDLDEHGERSFTFMVKPSADQFLQLSDIPSFQKGEWLHVCSIALANQPSRSSTFAAIAQMKEVGGYVSFDPNLREEVWSEPQELQATVMRAVGLADVVKFSEEELQFLTGTQSIEEGLQAIADFQIPLVVVTLGAKGALVATPNSQQIVSGKAVKPIDTTGAGDAFVGGLLYRLSVAQDWHNQATILDAVKWANGCGALATTQKGAMTALPNQAALYAFLE 323
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EYN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EYN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EYN)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5EYN)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A0H3AER7_V | A0A0H3AER7: 5ey7 5f0z 5f11

(-) Related Entries Specified in the PDB File

5ey7 5EY7 CONTAINS THE SAME PROTEIN IN APO FORM
5f0z
5f11