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(-) Description

Title :  CRYSTAL STRUCTURE OF UBIG MUTANT IN COMPLEX WITH SAH
 
Authors :  Y. Zhu, X. Jiang, X. Li, M. Teng
Date :  13 Sep 15  (Deposition) - 21 Sep 16  (Release) - 21 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Complex, O-Methyltransferase, Ubiquinone Biosynthesis, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Zhu, X. Jiang, X. Li, M. Teng
Crystal Structure Of Ubig Mutant In Complex With Sah At 2. 1 Angstroms Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UBIQUINONE BIOSYNTHESIS O-METHYLTRANSFERASE
    Chains: A
    EC Number: 2.1.1.222, 2.1.1.64
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: UBIG, ECHS_A2372
    Organism Taxid: 331112
    Strain: HS
    Synonym: 2-OCTAPRENYL-6-HYDROXYPHENOL METHYLASE,3-DEMETHYLUBIQUINONE- 8 3-O-METHYLTRANSFERASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1SAH1Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:11 , PHE A:20 , TRP A:27 , LEU A:37 , ARG A:44 , GLY A:64 , CYS A:65 , GLY A:66 , ASP A:85 , MET A:86 , MET A:129 , GLU A:130 , MET A:131 , HOH A:408 , HOH A:420 , HOH A:423 , HOH A:446binding site for residue SAH A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DPM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5DPM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DPM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DPM)

(-) Exons   (0, 0)

(no "Exon" information available for 5DPM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:206
                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh.....eeeee....hhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhh...eeee.hhhhhhhhhh..eeeeeee.hhhhh.hhhhhhhhhhhheeeeeeeeeee........hhhhhhhhhhh..eeeeeeeeeeee....eeeee......eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dpm A  10 HNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKFIKPAELLGWVDQTSLKERHITGLHYNPITNTFKLGPGVDVNYMLHTQNK 240
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159    || 194       204       214       224       234      
                                                                                                                                                                                    164|                                                  
                                                                                                                                                                                     190
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DPM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DPM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DPM)

(-) Gene Ontology  (12, 20)

Asymmetric/Biological Unit(hide GO term definitions)

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  5dpm
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        UBIG_ECOLI | P17993: 4kdc 4kdr

(-) Related Entries Specified in the PDB File

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