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(-) Description

Title :  CRYSTAL STRUCTURE OF UBIG/SAH COMPLEX
 
Authors :  Y. Zhu, M. Teng, X. Li
Date :  25 Apr 13  (Deposition) - 30 Apr 14  (Release) - 30 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Rossmann Fold, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Zhu, M. Teng, X. Li
Crystal Structure Of The Ubig/Sah Complex
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 3-DEMETHYLUBIQUINONE-9 3-METHYLTRANSFERASE
    Chains: A
    EC Number: 2.1.1.64, 2.1.1.222
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: UBIG, PUFX, YFAB, B2232, JW2226
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12
    Synonym: 2-POLYPRENYL-6-HYDROXYPHENYL METHYLASE, 3,4-DIHYDROXY-5- HEXAPRENYLBENZOATE METHYLTRANSFERASE, DHHB METHYLTRANSFERASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1SAH1Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:11 , ILE A:17 , PHE A:20 , TRP A:27 , LEU A:37 , ARG A:44 , GLY A:64 , CYS A:65 , GLY A:66 , ASP A:85 , MET A:86 , MET A:129 , GLU A:130 , HOH A:401 , HOH A:402 , HOH A:405 , HOH A:410 , HOH A:413 , HOH A:467BINDING SITE FOR RESIDUE SAH A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KDR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4KDR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KDR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KDR)

(-) Exons   (0, 0)

(no "Exon" information available for 4KDR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh.....eeeee....hhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhh...eeee.hhhhhhhhh...eeeeeee.hhhhh.hhhhhhhhhhhheeeeeeeeeee..........hhhhhhhhhh...eeeeeeeeeeee....eeeee......eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kdr A  10 HNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGVKKFIKPAELLGWVDQTSLKERHITGLHYNPITNTFKLGPGVDVNYMLHTQNK 240
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159   ||  192       202       212       222       232        
                                                                                                                                                                                   163|                                                     
                                                                                                                                                                                    187
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KDR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KDR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KDR)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        UBIG_ECOLI | P17993: 4kdc 5dpm

(-) Related Entries Specified in the PDB File

4kdc