5J5V - JenaLib

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Biological Unit 1 (Jmol Viewer)

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Biological Unit 3 (Jmol Viewer)

Title :   CDIA-CT FROM UROPATHOGENIC ESCHERICHIA COLI IN COMPLEX WITH COGNATE IMMUNITY PROTEIN AND CYSK

Authors :   C. W. Goulding, P. M. Johnson, R. P. Morse

Date :   04 Apr 16 (Deposition) - 27 Jul 16 (Release) - 03 May 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.75

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C  (1x)
Biol. Unit 2: D,E,F  (1x)
Biol. Unit 3: A,B,C,D,E,F  (1x)

Keywords :   Complex, Toxin, Endonuclease, Immunity Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. M. Johnson, C. M. Beck, R. P. Morse, F. Garza-Sanchez, D. A. Low, C. S. Hayes, C. W. Goulding
Unraveling The Essential Role Of Cysk In Cdi Toxin Activation.
Proc. Natl. Acad. Sci. V. 113 9792 2016 U. S. A.
PubMed-ID: 27531961 | Reference-DOI: 10.1073/PNAS.1607112113

Molecule 1 - CYSTEINE SYNTHASE A
	Chains	:	A, D
	EC Number	:	2.5.1.47
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Gene	:	CYSK, Z3680, ECS3286
	Organism Taxid	:	83334
	Synonym	:	CSASE A,O-ACETYLSERINE (THIOL)-LYASE A,OAS-TL A,O- ACETYLSERINE SULFHYDRYLASE A,SULFATE STARVATION-INDUCED PROTEIN 5, SSI5

Molecule 2 - TRNA NUCLEASE CDIA
	Chains	:	B, E
	EC Number	:	3.1.-.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Gene	:	CDIA, ECP_4580
	Organism Taxid	:	362663
	Strain	:	536 / UPEC
	Synonym	:	TRNASE CDIA,TOXIN CDIA

Molecule 3 - IMMUNITY PROTEIN CDII
	Chains	:	C, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Gene	:	CDII, ECP_4579
	Organism Taxid	:	362663
	Strain	:	536 / UPEC

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A	B	C
Biological Unit 2 (1x)	:				D	E	F
Biological Unit 3 (1x)	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 12)

No.	Name	Count	Type	Full Name
1	LLP	2	Mod. Amino Acid	(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC ACID
2	MSE	10	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (2, 6)

No.	Name	Count	Type	Full Name
1	LLP	1	Mod. Amino Acid	(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC ACID
2	MSE	5	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (2, 6)

No.	Name	Count	Type	Full Name
1	LLP	1	Mod. Amino Acid	(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC ACID
2	MSE	5	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 3 (2, 12)

No.	Name	Count	Type	Full Name
1	LLP	2	Mod. Amino Acid	(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC ACID
2	MSE	10	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 5J5V)

(no "SS Bond" information available for 5J5V)

(no "Cis Peptide Bond" information available for 5J5V)

(no "SAP(SNP)/Variant" information available for 5J5V)

(no "PROSITE Motif" information available for 5J5V)

(no "Exon" information available for 5J5V)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:313
                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhh....eee........eeeee........hhhhhhhhhhhhhhhh.......eeeee..hhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhhh.......eeeeeee...hhhhhhhh.......................hhhhh.eeeeehhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh...eeeee..hhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5j5v A   2 GKIFEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVkCRIGANMIWDAEKRGVLKPGVELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFIAGVGTGGTLTGVSRYIKGTKGKTDLISVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPANLDLKLVDKVIGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFAD 314
                                    11        21        31        41|       51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311   
                                                                   42-LLP

Chain B from PDB  Type:PROTEIN  Length:96
                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh...hhhhhhhhhhhhh...ee.....eehhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 5j5v B 132 LNQKQESAIKKIDNTIKNALKDHDIIGTLKDmDGKPVPKENGGYWDHmQEmQNTLRGLRNHADTLKNVNNPEAQAAYGRATDAINKIESALKGYGI 227
                                   141       151       161 |     171       181|      191       201       211       221      
                                                         163-MSE         179-MSE                                            
                                                                            182-MSE

Chain C from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhh..hhhhhhhhhhhhh......hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 5j5v C   2 ITLRKLIGNINmTKEPEQQSPLELWFERIIDVPLEKLTVEDLCRAIRQNLCIDQLmPRVLEVLTKEPLAGEYYDGELIAALSTIKGEDLKDQKSTFTQIRQLINQLEPSDINDDLRKDILKIN 124
                                    11 |      21        31        41        51     |  61        71        81        91       101       111       121   
                                      13-MSE                                      57-MSE

Chain D from PDB  Type:PROTEIN  Length:313
                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhh....eee........eeeee........hhhhhhhhhhhhhhhh.......eeeee..hhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhhhh.......eeeeeee...hhhhhhhh.......................hhhhh.eeeeehhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh...eeeee..hhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5j5v D   2 GKIFEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVkCRIGANMIWDAEKRGVLKPGVELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFIAGVGTGGTLTGVSRYIKGTKGKTDLISVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPANLDLKLVDKVIGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFAD 314
                                    11        21        31        41|       51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311   
                                                                   42-LLP

Chain E from PDB  Type:PROTEIN  Length:96
                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhh...hhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 5j5v E 132 LNQKQESAIKKIDNTIKNALKDHDIIGTLKDmDGKPVPKENGGYWDHmQEmQNTLRGLRNHADTLKNVNNPEAQAAYGRATDAINKIESALKGYGI 227
                                   141       151       161 |     171       181|      191       201       211       221      
                                                         163-MSE         179-MSE                                            
                                                                            182-MSE

Chain F from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh........hhhhhhhhhhhhhhh..hhhhhhhhhhhhh......hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5j5v F   2 ITLRKLIGNINmTKEPEQQSPLELWFERIIDVPLEKLTVEDLCRAIRQNLCIDQLmPRVLEVLTKEPLAGEYYDGELIAALSTIKGEDLKDQKSTFTQIRQLINQLEPSDINDDLRKDILKINQII 127
                                    11 |      21        31        41        51     |  61        71        81        91       101       111       121      
                                      13-MSE                                      57-MSE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5J5V)

(no "CATH Domain" information available for 5J5V)

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		Biological Unit 1	[ Jena3D ]
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 12)

Sites (0, 0)

SS Bonds (0, 0)

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