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(-) Description

Title :  CDIA-CT FROM UROPATHOGENIC ESCHERICHIA COLI IN COMPLEX WITH CYSK
 
Authors :  R. P. Morse, C. W. Goulding, P. M. Johnson
Date :  31 Mar 16  (Deposition) - 27 Jul 16  (Release) - 03 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B,E,F
Keywords :  Complex, Toxin, Endonuclease (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. M. Johnson, C. M. Beck, R. P. Morse, F. Garza-Sanchez, D. A. Low, C. S. Hayes, C. W. Goulding
Unraveling The Essential Role Of Cysk In Cdi Toxin Activation.
Proc. Natl. Acad. Sci. V. 113 9792 2016 U. S. A.
PubMed-ID: 27531961  |  Reference-DOI: 10.1073/PNAS.1607112113

(-) Compounds

Molecule 1 - CYSTEINE SYNTHASE A
    Chains: E, A
    EC Number: 2.5.1.47
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: CYSK, Z3680, ECS3286
    Organism Taxid: 83334
    Synonym: CSASE A,O-ACETYLSERINE (THIOL)-LYASE A,OAS-TL A,O- ACETYLSERINE SULFHYDRYLASE A,SULFATE STARVATION-INDUCED PROTEIN 5, SSI5
 
Molecule 2 - TRNA NUCLEASE CDIA
    Chains: F, B
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: CDIA, ECP_4580
    Mutation: YES
    Organism Taxid: 362663
    Strain: 536 / UPEC
    Synonym: TRNASE CDIA,TOXIN CDIA

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1LLP2Mod. Amino Acid(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC ACID

(-) Sites  (0, 0)

(no "Site" information available for 5J43)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5J43)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Pro F:167 -Val F:168
2Lys B:170 -Glu B:171
3Trp B:176 -Asp B:177

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5J43)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5J43)

(-) Exons   (0, 0)

(no "Exon" information available for 5J43)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:313
                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhh....eee........eeeee.........hhhhhhhhhhhhhhh.......eeeee..hhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhh........eeeeeee...hhhhhhhh.......................hhhhh.eeeeehhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.........eeeee..hhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5j43 A   2 GKIFEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVkCRIGANMIWDAEKRGVLKPGVELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFIAGVGTGGTLTGVSRYIKGTKGKTDLISVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPANLDLKLVDKVIGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFAD 314
                                    11        21        31        41|       51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311   
                                                                   42-LLP                                                                                                                                                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:101
                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 5j43 B 127 KTVDKLNQKQESAIKKIDNTIKNALKDHDIIGTLKDMDGKPVPKENGGYWDAMQEMQNTLRGLRNHADTLKNVNNPEAQAAYGRATDAINKIESALKGYGI 227
                                   136       146       156       166       176       186       196       206       216       226 


Chain E from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhh....eee........eeeee.........hhhhhhhhhhhhhhh.......eeeee..hhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhh........eeeeeee...hhhhhhhh.......................hhhhh.eeeeehhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.........eeeee..hhhhhh........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5j43 E   2 GKIFEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVkCRIGANMIWDAEKRGVLKPGVELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFIAGVGTGGTLTGVSRYIKGTKGKTDLISVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPANLDLKLVDKVIGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADL 315
                                    11        21        31        41|       51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311    
                                                                   42-LLP                                                                                                                                                                                                                                                                             


Chain F from PDB  Type:PROTEIN  Length:101
                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------- Transcript
                 5j43 F 127 KTVDKLNQKQESAIKKIDNTIKNALKDHDIIGTLKDMDGKPVPKENGGYWDAMQEMQNTLRGLRNHADTLKNVNNPEAQAAYGRATDAINKIESALKGYGI 227
                                   136       146       156       166       176       186       196       206       216       226
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5J43)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5J43)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5J43)

(-) Gene Ontology  (27, 34)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Lys B:170 - Glu B:171   [ RasMol ]  
    Pro F:167 - Val F:168   [ RasMol ]  
    Trp B:176 - Asp B:177   [ RasMol ]  
 

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  5j43
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CDIA_ECOL5 | Q0T963: 5j5v
        CYSK_ECO57 | P0ABK6: 5j5v
        CYSK_ECOLI | P0ABK5: 5j5v

(-) Related Entries Specified in the PDB File

5j4a 5j5v