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(-) Description

Title :  CDIA-CT TOXIN FROM BURKHOLDERIA PSEUDOMALLEI E479 IN COMPLEX WITH COGNATE CDII IMMUNITY PROTEIN
 
Authors :  C. W. Goulding, P. M. Johnson
Date :  31 Mar 16  (Deposition) - 27 Jul 16  (Release) - 21 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Complex, Toxin, Endonuclease, Immunity Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. M. Johnson, G. C. Gucinski, F. Garza-Sanchez, T. Wong, L. W. Hung, C. S. Hayes, C. W. Goulding
Functional Diversity Of Cytotoxic Trnase/Immunity Protein Complexes From Burkholderia Pseudomallei.
J. Biol. Chem. V. 291 19387 2016
PubMed-ID: 27445337  |  Reference-DOI: 10.1074/JBC.M116.736074

(-) Compounds

Molecule 1 - TRNA NUCLEASE CDIA
    Chains: A, C
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: CDIA
    Mutation: YES
    Organism Scientific: BURKHOLDERIA PSEUDOMALLEI
    Organism Taxid: 28450
    Synonym: TOXIN CDIA
 
Molecule 2 - IMMUNITY PROTEIN CDII
    Chains: B, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: CDII
    Organism Scientific: BURKHOLDERIA PSEUDOMALLEI
    Organism Taxid: 28450

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5J4A)

(-) Sites  (0, 0)

(no "Site" information available for 5J4A)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5J4A)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5J4A)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5J4A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5J4A)

(-) Exons   (0, 0)

(no "Exon" information available for 5J4A)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:116
                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh..eee........eee........ee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhh..hhhhhh.eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 5j4a A 201 RPGEAGAAAELENYLGGTLQRAPQGSSVDFVFSSGPNNGKTVDFMLTPDTVAQAAKINQFFDKNLNNFMNTLSDHAAAADFVPLASRFLSEANKTLLVKAIGNLPQKLQAKIILIK 316
                                   210       220       230       240       250       260       270       280       290       300       310      


Chain B from PDB  Type:PROTEIN  Length:104
                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 5j4a B   2 AGSIVISKEVRVPVSTSQFDYLVSRIGDQFHSSDMWIKDEVYLPMEEGGMSFISTESLNSSGLSIFLATVMRARAASQAEESFPLYENVWNQLVEKLRQDARLG 105
                                    11        21        31        41        51        61        71        81        91       101    


Chain C from PDB  Type:PROTEIN  Length:116
                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh..eee........eee........ee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhh.hhhhhh.eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 5j4a C 201 RPGEAGAAAELENYLGGTLQRAPQGSSVDFVFSSGPNNGKTVDFMLTPDTVAQAAKINQFFDKNLNNFMNTLSDHAAAADFVPLASRFLSEANKTLLVKAIGNLPQKLQAKIILIK 316
                                   210       220       230       240       250       260       270       280       290       300       310      


Chain D from PDB  Type:PROTEIN  Length:104
                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 5j4a D   2 AGSIVISKEVRVPVSTSQFDYLVSRIGDQFHSSDMWIKDEVYLPMEEGGMSFISTESLNSSGLSIFLATVMRARAASQAEESFPLYENVWNQLVEKLRQDARLG 105
                                    11        21        31        41        51        61        71        81        91       101
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5J4A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5J4A)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (5, 5)

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 Related Entries

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(-) Related Entries Specified in the PDB File

5j43 5j5v