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(-) Description

Title :  CYCLOALTERNAN-FORMING ENZYME FROM LISTERIA MONOCYTOGENES IN COMPLEX WITH MALTOPENTAOSE
 
Authors :  A. S. Halavaty, S. H. Light, G. Minasov, J. Winsor, S. Grimshaw, L. Shuva S. Peterson, W. F. Anderson, Center For Structural Genomics Of I Diseases (Csgid)
Date :  20 Jan 16  (Deposition) - 25 Jan 17  (Release) - 22 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Lmo2446, Listeria Monocytogenes Egd-E, Center For Structural Genomics Of Infectious Diseases, Csgid, Sugar Binding Protein, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. H. Light, L. A. Cahoon, K. V. Mahasenan, M. Lee, B. Boggess, A. S. Halavaty, S. Mobashery, N. E. Freitag, W. F. Anderson
Transferase Versus Hydrolase: The Role Of Conformational Flexibility In Reaction Specificity.
Structure V. 25 295 2017
PubMed-ID: 28089449  |  Reference-DOI: 10.1016/J.STR.2016.12.007

(-) Compounds

Molecule 1 - LMO2446 PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21 MAGIC
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: LMO2446
    Organism Scientific: LISTERIA MONOCYTOGENES SEROVAR 1/2A (STRAIN ATCC BAA-679 / EGD-E)
    Organism Taxid: 169963
    Strain: ATCC BAA-679 / EGD-E

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 38)

Asymmetric/Biological Unit (6, 38)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2CEX3Ligand/IonALPHA-D-GLUCOPYRANOSYL-(1->4)-ALPHA-D-GLUCOPYRANOSYL-(1->4)-ALPHA-D-GLUCOPYRANOSYL-(1->4)-ALPHA-D-GLUCOPYRANOSYL-(1->4)-ALPHA-D-GLUCOPYRANOSE
3CL2Ligand/IonCHLORIDE ION
4MG2Ligand/IonMAGNESIUM ION
5MSE29Mod. Amino AcidSELENOMETHIONINE
6PEG1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:1431 , HOH A:1989 , HOH A:2220 , HOH A:2337 , HOH A:2387 , HOH A:2454binding site for residue MG A 1101
2AC2SOFTWAREASN A:346 , HOH A:1239 , HOH A:1289 , HOH A:1349 , HOH A:1352 , HOH A:2260binding site for residue MG A 1102
3AC3SOFTWAREGLU A:939 , GLU A:941 , THR A:958 , GLY A:961 , ASP A:1054binding site for residue CA A 1103
4AC4SOFTWAREARG A:991 , THR A:1025 , HOH A:2179binding site for residue CL A 1104
5AC5SOFTWAREGLY A:71 , SER A:123 , VAL A:124 , ASP A:179binding site for residue CL A 1105
6AC6SOFTWAREASN A:270 , GLU A:271 , TYR A:272binding site for residue PEG A 1106
7AC7SOFTWAREASP A:513 , ASP A:767 , ASN A:770 , HIS A:774 , TYR A:782 , TYR A:783 , PHE A:942 , HOH A:1206 , HOH A:1288 , HOH A:1307 , HOH A:1313 , HOH A:1408 , HOH A:1445 , HOH A:1533 , HOH A:1537 , HOH A:1560 , HOH A:1588 , HOH A:1623 , HOH A:1847 , HOH A:2261binding site for residue CEX A 1107
8AC8SOFTWAREGLU A:43 , ASN A:44 , GLY A:45 , GLN A:46 , TYR A:66 , ASN A:69 , TRP A:76 , SER A:173 , GLY A:174 , TYR A:175 , THR A:176 , ASP A:435 , HOH A:1276 , HOH A:1305 , HOH A:1316 , HOH A:1328 , HOH A:1334 , HOH A:1398 , HOH A:1474 , HOH A:1646 , HOH A:1710 , HOH A:2047binding site for residue CEX A 1108
9AC9SOFTWARETRP A:40 , ASN A:72 , ASN A:73 , HOH A:1284 , HOH A:1427 , HOH A:1670 , HOH A:1797binding site for residue CEX A 1109

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HPO)

(-) Cis Peptide Bonds  (5, 6)

Asymmetric/Biological Unit
No.Residues
1Ser A:23 -Pro A:24
2Trp A:40 -Pro A:41
3Gly A:106 -Pro A:107
4Ser A:198 -Pro A:199
5Ser A:665 -Pro A:666

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HPO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HPO)

(-) Exons   (0, 0)

(no "Exon" information available for 5HPO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1059
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee................ee.........eeeeeeee.....eeeeeeeee..ee...ee.eeeeee..eeeeeeeee......eeeeeeeeee....eeeeeeeeee..eeeeeeeeeeeee....eeeeeee.......eeeeeeee..eeeeeee..............eeee...eeeee...eeeeee....eeeeee....eeeee.......eeee.....eeeeeeeee......eeeee...........eeee.......hhhhhh....eeeeeee...eeeee.....eeeee......eeeeeeeeee.....eeeeee...hhhhhhhhhhhhhh.....hhhhh.eee......hhhhhhhhhhhhhhh.....eeee..........................hhhhh.......hhhhhhhhhhhh..eeeeee..ee......hhhhhhhhhhhhhh.......................ee....hhhhhhhhhhhhhhhhhh.....eee.................hhhhhhhhhhhhhhhhhhhhhhhhh.....ee.....hhhhh.eee......hhhhhhhhhhhhhhhhhh....ee...........hhhhhhhhhhhhhh...ee..............hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhh...hhhhh.....eee...eee.........eeeeee...eeee.....eee..eeeeee.......eeee...eeeeee..................eeeeee....eeeeeeee.....eeeeeeeeeehhh.eeeeee......eeeeee.....eeee..ee.....hhhhhhhh..eeeee....eeeeee......eeeeee......ee.hhheee..eee..........eeeee.....eeeeee......eeeeeeeeee.....eeeeeee..eeeeeee.........eeeeeeeee....eeeeee........eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5hpo A    2 DGEYHSPYGDDDLYTVQPTERSPRDPKAGEDVILNITTWPIENGQDVWVEWTKNGVAQENVTAAYDYNSGNNTYWKADLGKFEKGDEITYTTKGSTNGGTAYESGPFTFYVTDWEYVQDVTSVVDNGDSITLNmTATAGDFSPKLYLSFEDLDTLRmELSPTGKETGHAGKSGYTVEDTAEKVTVTTEDLSIEIQKSPYRmEVHQADGTLLTSEYTTANSLGWLTDGKNVINQYQNNFmTPSDEAFYGFGERYDTINQRGKDVETYVYNEYQDQAQTERTYLAVPFFVSANKYGmYVNSDFHSQFQmASKVEDKYSFVLDNDGDmTNmLDYYVISGKDQNDIVNNYTDITGKTTLLPKWAFGLWmSANEWDRESDVSSALSNAKANDIPATGFVLEQWSDEETYYIWNNATYTAKKNGEAFSYDDFTFNGKWTDPKGmVDSVHDAGmNIVLWQVPVLKDDGTVYEQRDNDEEYmISQGYSADDGTGAPYRVPASQWFGNGILLDFTNKDAVDWWTSQREYLLTEVGIDGFKTDGGEmVWGRDTTFSNGEKGQEmRNRYPTDYVSSYFDFAKSINPEAVSFSRSGTSGAQKSGIYWSGDQTSTFDSFQASLKAGLSASTSGVSYWAWDmAGFTGDYPTAELYKRATAmAAFAPImQFHSEKSDPSPSEERSPWNAVARTGDETILPTFQKYLYTRmNLLPYIYTAAKDTADNGKSmmRQmAmDYPEDVNARDLDEQYmFGDDLLVAPIVQEGQTEKEVYLPEGEWVDIWNGGVHPGGETISYYADVDTLPVFAKAGAIIPmNmTDGYQLGQNVGNDLKSYDNLTFRVYPSGDSEYSFYDDVNGGEmRDISVSEDFANEKVSVDLPAmADETTmQVFSTEPTSVTIDGADVAKADTLDAFNEATTGYYYDTVQNLTYVKAAAKDAKQAIVLNGVNHAPYEAEFGHLTNVTTASDHAGYTGTGFVAGFDAEKEAVEFDIDAVDGASDYTmEVRYSAGVEDATRTVYINGKKQQITLPKTANWDTWNTVEVPVTLQAGNNQVVFDFEADDTAGINFDHVVIKK 1060
                                    11        21        31        41        51        61        71        81        91       101       111       121       131   |   141       151      |161       171       181       191       201|      211       221       231       241       251       261       271       281       291    |  301      |311       321    |  331       341       351       361    |  371       381       391       401       411       421       431       441      |451       461       471   |   481       491       501       511       521       531      |541       551   |   561       571       581       591       601       611       621       631       641      |651   |   661       671       681       691    |  701       711    || 721|      731      |741       751       761       771       781       791       801 |     811       821       831       841    |  851       861     | 871 |     881       891       901       911       921       931       941       951       961       971       981      |991      1001      1011      1021      1031      1041      1051         
                                                                                                                                                               135-MSE                158-MSE                                     202-MSE                               240-MSE                                                 296-MSE     308-MSE           326-MSE                                 366-MSE                                                                  439-MSE  448-MSE                    475-MSE                                                        538-MSE          555-MSE                                                                   629-MSE            648-MSE  |                                      696-MSE             716-MSE |             738-MSE                                                        801-MSE                                      846-MSE              867-MSE |                                                                                                                988-MSE                                                                    
                                                                                                                                                                                                                                                                                                                                                                 329-MSE                                                                                                                                                                                                                                                                                                                               655-MSE                                                       717-MSE|                                                                              803-MSE                                                               873-MSE                                                                                                                                                                                       
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        720-MSE                                                                                                                                                                                                                                                                                                                                                
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          722-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HPO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HPO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HPO)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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        Q8Y4J2_LISMO | Q8Y4J2: 4kmq 4kwu 5f7u 5hxm 5i0d

(-) Related Entries Specified in the PDB File

4kmq 1.9 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN LMO2446 FROM LISTERIA MONOCYTOGENES EGD-E
4kwu 1.9 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN LMO2446 FROM LISTERIA MONOCYTOGENES EGD-E IN COMPLEX WITH ALPHA-D-GLUCOSE, BETA-D-GLUCOSE, MAGNESIUM AND CALCIUM RELATED ID: CSGID-IDP05250 RELATED DB: TARGETTRACK