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(-) Description

Title :  1.9 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN LMO2446 FROM LISTERIA MONOCYTOGENES EGD-E
 
Authors :  A. S. Halavaty, G. Minasov, E. V. Filippova, I. Dubrovska, J. Winsor, L. Shuvalova, S. Peterson, W. F. Anderson, Center For Structural G Of Infectious Diseases (Csgid)
Date :  08 May 13  (Deposition) - 29 May 13  (Release) - 23 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Uncharacterized Protein, Virulence, Pathogenesis, Csgid, Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Tim-Barrel, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. H. Light, L. A. Cahoon, A. S. Halavaty, N. E. Freitag, W. F. Anderson
Structure To Function Of An Alpha-Glucan Metabolic Pathway That Promotes Listeria Monocytogenes Pathogenesis.
Nat Microbiol V. 2 16202 2016
PubMed-ID: 27819654  |  Reference-DOI: 10.1038/NMICROBIOL.2016.202

(-) Compounds

Molecule 1 - LMO2446 PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21 MAGIC
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 31-1091
    Gene: LMO2446
    Organism Scientific: LISTERIA MONOCYTOGENES
    Organism Taxid: 169963
    Strain: EGD-E

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 37)

Asymmetric/Biological Unit (2, 37)
No.NameCountTypeFull Name
1MG8Ligand/IonMAGNESIUM ION
2MSE29Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:377 , HOH A:1354 , HOH A:2097 , HOH A:2124 , HOH A:2196 , HOH A:2197BINDING SITE FOR RESIDUE MG A 1101
2AC2SOFTWAREGLU A:401 , ASP A:403 , ASP A:407 , HOH A:1953 , HOH A:2139 , HOH A:2142BINDING SITE FOR RESIDUE MG A 1102
3AC3SOFTWAREGLU A:970 , GLU A:972 , THR A:989 , GLY A:992 , ASP A:1085BINDING SITE FOR RESIDUE MG A 1103
4AC4SOFTWAREHOH A:1476 , HOH A:1536 , HOH A:2081 , HOH A:2164 , HOH A:2165 , HOH A:2166BINDING SITE FOR RESIDUE MG A 1104
5AC5SOFTWAREHOH A:1580 , HOH A:1659 , HOH A:2012 , HOH A:2127 , HOH A:2138 , HOH A:2159BINDING SITE FOR RESIDUE MG A 1105
6AC6SOFTWAREHOH A:2131 , HOH A:2141 , HOH A:2145 , HOH A:2168BINDING SITE FOR RESIDUE MG A 1106
7AC7SOFTWAREHOH A:2154 , HOH A:2155 , HOH A:2156 , HOH A:2213BINDING SITE FOR RESIDUE MG A 1107
8AC8SOFTWAREHOH A:1568 , HOH A:1590 , HOH A:2200 , HOH A:2201BINDING SITE FOR RESIDUE MG A 1108

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KMQ)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Ser A:54 -Pro A:55
2Trp A:71 -Pro A:72
3Gly A:137 -Pro A:138
4Ser A:229 -Pro A:230
5Ser A:696 -Pro A:697

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KMQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KMQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4KMQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1058
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee................ee.........eeeeeeee.....eeeeeeeee..ee...ee.eeeeee..eeeeeeeee......eeeeeeeeee.....eeeeeeeee..eeeeeeeeeeeee....eeeeeee.......eeeeeeee..eeeeeee..............eeee...eeeee...eeeeee....eeeeee....eeee........eeee.....eeeeeeeee......eeeee...........eee........hhhhhh....eeeeeee...eeeee.....eeeee......eeeeeeeeee.....eeeeee...hhhhhhhhhhhhhh.....hhhhh.eee......hhhhhhhhhhhhhhh.....eeee..........................hhhhh.......hhhhhhhhhhhh..eeeeee..ee......hhhhhhhhhhhhhhh......................ee....hhhhhhhhhhhhhhhhhh.....eee.................hhhhhhhhhhhhhhhhhhhhhhhhh.....ee.....hhhhh.eee......hhhhhhhhhhhhhhhhhh....ee...........hhhhhhhhhhhhhh...eee.............hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhh..hhhhh.....eee...eee.........eeeeee...eeee.....eee..eeeeee.......eeee...eeeeee..................eeeeee....eeeeeeee.....eeeeeeeeeehhh.eeeeee......eeeeee.....eeee..ee.....hhhhhhhh..eeeee....eeeeee......eeeeee......ee.hhheee..eee.........eeeee.....eeeeee......eeeeeeeeee.....eeeeeee..eeeeeee.........eeeeeeeee....eeeeee........eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4kmq A   33 DGEYHSPYGDDDLYTVQPTERSPRDPKAGEDVILNITTWPIENGQDVWVEWTKNGVAQENVTAAYDYNSGNNTYWKADLGKFEKGDEITYTTKGSTNGGTAYESGPFTFYVTDWEYVQDVTSVVDNGDSITLNmTATAGDFSPKLYLSFEDLDTLRmELSPTGKETGHAGKSGYTVEDTAEKVTVTTEDLSIEIQKSPYRmEVHQADGTLLTSEYTTANSLGWLTDGKNVINQYQNNFmTPSDEAFYGFGERYDTINQRGKDVETYVYNEYQDQAQTERTYLAVPFFVSANKYGmYVNSDFHSQFQmASKVEDKYSFVLDNDGDmTNmLDYYVISGKDQNDIVNNYTDITGKTTLLPKWAFGLWmSANEWDRESDVSSALSNAKANDIPATGFVLEQWSDEETYYIWNNATYTAKKNGEAFSYDDFTFNGKWTDPKGmVDSVHDAGmNIVLWQVPVLKDDGTVYEQRDNDEEYmISQGYSADDGTGAPYRVPASQWFGNGILLDFTNKDAVDWWTSQREYLLTEVGIDGFKTDGGEmVWGRDTTFSNGEKGQEmRNRYPTDYVSSYFDFAKSINPEAVSFSRSGTSGAQKSGIYWSGDQTSTFDSFQASLKAGLSASTSGVSYWAWDmAGFTGDYPTAELYKRATAmAAFAPImQFHSEKSDPSPSEERSPWNAVARTGDETILPTFQKYLYTRmNLLPYIYTAAKDTADNGKSmmRQmAmDYPEDVNARDLDEQYmFGDDLLVAPIVQEGQTEKEVYLPEGEWVDIWNGGVHPGGETISYYADVDTLPVFAKAGAIIPmNmTDGYQLGQNVGNDLKSYDNLTFRVYPSGDSEYSFYDDVNGGEmRDISVSEDFANEKVSVDLPAmADETTmQVFSTEPTSVTIDGADVAKADTLDAFNEATTGYYYDTVQNLTYVKAAAKDAKQAIVLNGVNHAPYEAEFGHLTNVTTASHAGYTGTGFVAGFDAEKEAVEFDIDAVDGASDYTmEVRYSAGVEDATRTVYINGKKQQITLPKTANWDTWNTVEVPVTLQAGNNQVVFDFEADDTAGINFDHVVIKK 1091
                                    42        52        62        72        82        92       102       112       122       132       142       152       162   |   172       182      |192       202       212       222       232|      242       252       262       272       282       292       302       312       322    |  332      |342       352    |  362       372       382       392    |  402       412       422       432       442       452       462       472      |482       492       502   |   512       522       532       542       552       562      |572       582   |   592       602       612       622       632       642       652       662       672      |682   |   692       702       712       722    |  732       742    || 752|      762      |772       782       792       802       812       822       832 |     842       852       862       872    |  882       892     | 902 |     912       922       932       942       952       962       972       982||     993      1003      1013     |1023      1033      1043      1053      1063      1073      1083        
                                                                                                                                                               166-MSE                189-MSE                                     233-MSE                               271-MSE                                                 327-MSE     339-MSE           357-MSE                                 397-MSE                                                                  470-MSE  479-MSE                    506-MSE                                                        569-MSE          586-MSE                                                                   660-MSE            679-MSE  |                                      727-MSE             747-MSE |             769-MSE                                                        832-MSE                                      877-MSE              898-MSE |                                                                            983|                              1019-MSE                                                                    
                                                                                                                                                                                                                                                                                                                                                                 360-MSE                                                                                                                                                                                                                                                                                                                               686-MSE                                                       748-MSE|                                                                              834-MSE                                                               904-MSE                                                                         985                                                                                                          
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        751-MSE                                                                                                                                                                                                                                                                                                                                               
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          753-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KMQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KMQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KMQ)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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        Q8Y4J2_LISMO | Q8Y4J2: 4kwu 5f7u 5hpo 5hxm 5i0d

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