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(-) Description

Title :  1.9 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN LMO2446 FROM LISTERIA MONOCYTOGENES EGD-E IN COMPLEX WITH ALPHA-D-GLUCOSE, BETA-D-GLUCOSE, MAGNESIUM AND CALCIUM
 
Authors :  A. S. Halavaty, G. Minasov, I. Dubrovska, J. Winsor, L. Shuvalova, S. Pe W. F. Anderson
Date :  24 May 13  (Deposition) - 19 Jun 13  (Release) - 19 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Center For Structural Genomics Of Infectious Diseases, Csgid, Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Tim-Barrel, Beta-Fold, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. S. Halavaty, G. Minasov, I. Dubrovska, J. Winsor, L. Shuvalova, S. Peterson, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
1. 9 Angstrom Resolution Crystal Structure Of Uncharacterize Protein Lmo2446 From Listeria Monocytogenes Egd-E In Comple With Alpha-D-Glucose, Beta-D-Glucose, Magnesium And Calcium
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LMO2446 PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21-MAGIC
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 31-1091
    Gene: LMO2446
    Organism Scientific: LISTERIA MONOCYTOGENES
    Organism Taxid: 169963
    Strain: EGD-E

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 48)

Asymmetric/Biological Unit (5, 48)
No.NameCountTypeFull Name
1BGC4Ligand/IonBETA-D-GLUCOSE
2CA1Ligand/IonCALCIUM ION
3GLC6Ligand/IonALPHA-D-GLUCOSE
4MG8Ligand/IonMAGNESIUM ION
5MSE29Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:401 , ASP A:403 , ASP A:407 , HOH A:1544 , HOH A:2259 , HOH A:2323BINDING SITE FOR RESIDUE MG A 1101
02AC2SOFTWAREASN A:377 , HOH A:1241 , HOH A:1264 , HOH A:1354 , HOH A:1385 , HOH A:1398BINDING SITE FOR RESIDUE MG A 1102
03AC3SOFTWAREHOH A:1227 , HOH A:1461 , HOH A:1487 , HOH A:1550 , HOH A:1577 , HOH A:1925BINDING SITE FOR RESIDUE MG A 1103
04AC4SOFTWAREHOH A:1771 , HOH A:2054 , HOH A:2312 , HOH A:2336 , HOH A:2337 , HOH A:2338BINDING SITE FOR RESIDUE MG A 1104
05AC5SOFTWAREHOH A:1932 , HOH A:1943 , HOH A:2386 , HOH A:2411 , HOH A:2412BINDING SITE FOR RESIDUE MG A 1105
06AC6SOFTWAREHOH A:1338 , HOH A:2173 , HOH A:2359 , HOH A:2360BINDING SITE FOR RESIDUE MG A 1106
07AC7SOFTWAREHOH A:1902 , HOH A:1977 , HOH A:2162 , HOH A:2388 , HOH A:2413 , HOH A:2418BINDING SITE FOR RESIDUE MG A 1107
08AC8SOFTWAREHOH A:2015 , HOH A:2169 , HOH A:2290 , HOH A:2408 , HOH A:2409 , HOH A:2410BINDING SITE FOR RESIDUE MG A 1108
09AC9SOFTWAREGLU A:970 , GLU A:972 , THR A:989 , GLY A:992 , ASP A:1085BINDING SITE FOR RESIDUE CA A 1109
10BC1SOFTWARELYS A:59 , TRP A:146 , GLN A:267 , GLN A:338 , HOH A:1616 , HOH A:1637 , HOH A:1951 , HOH A:2139BINDING SITE FOR RESIDUE BGC A 1110
11BC2SOFTWAREASN A:103 , ASN A:104 , HOH A:2107 , HOH A:2174BINDING SITE FOR RESIDUE BGC A 1111
12BC3SOFTWAREASP A:78 , ASN A:92 , THR A:94 , HOH A:1573BINDING SITE FOR RESIDUE BGC A 1112
13BC4SOFTWAREASN A:301 , TRP A:528 , ARG A:614 , ASP A:630 , GLU A:691 , GLC A:1116 , HOH A:1540 , HOH A:1917 , HOH A:2104BINDING SITE FOR RESIDUE BGC A 1113
14BC5SOFTWARETHR A:443 , TYR A:444 , TYR A:496 , GLU A:497 , GLN A:498 , HOH A:1880 , HOH A:2033 , HOH A:2354 , HOH A:2358BINDING SITE FOR RESIDUE GLC A 1114
15BC6SOFTWAREASP A:432 , GLU A:434 , ASN A:440 , TYR A:496 , HOH A:1405 , HOH A:1790BINDING SITE FOR RESIDUE GLC A 1115
16BC7SOFTWAREASN A:400 , GLU A:428 , GLN A:429 , GLU A:433 , TYR A:436 , TRP A:528 , BGC A:1113 , HOH A:1518 , HOH A:1656 , HOH A:2334BINDING SITE FOR RESIDUE GLC A 1116
17BC8SOFTWAREGLU A:74 , ASN A:75 , GLY A:76 , GLN A:77 , TYR A:97 , HOH A:1503 , HOH A:1981 , HOH A:2162BINDING SITE FOR RESIDUE GLC A 1117
18BC9SOFTWAREASN A:449 , HIS A:985 , GLY A:996 , TRP A:1051 , ASN A:1083 , HOH A:1547 , HOH A:2207BINDING SITE FOR RESIDUE GLC A 1118
19CC1SOFTWAREASP A:798 , ASN A:801 , HIS A:805 , TYR A:813 , TYR A:814 , HOH A:1391 , HOH A:1553 , HOH A:1706 , HOH A:1855 , HOH A:2046 , HOH A:2371BINDING SITE FOR RESIDUE GLC A 1119

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KWU)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Ser A:54 -Pro A:55
2Trp A:71 -Pro A:72
3Gly A:137 -Pro A:138
4Ser A:229 -Pro A:230
5Ser A:696 -Pro A:697

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KWU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KWU)

(-) Exons   (0, 0)

(no "Exon" information available for 4KWU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1059
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee................ee.........eeeeeeee.....eeeeeeeee..ee...ee.eeeeee..eeeeeeeee......eeeeeeeeee.....eeeeeeeee..eeeeeeeeeeeee....eeeeeee.......eeeeeeee..eeeeeee..............eeee...eeeee...eeeeee....eeeeee....eeeee.......eeee....eeeeeeeeee......eeeee...........eeee.......hhhhhh....eeeeeee...eeeee.....eeeee......eeeeeeeeeee....eeeeee...hhhhhhhhhhhhhh.....hhhhh.eeee.....hhhhhhhhhhhhhhh.....eeee..........................hhhhh.......hhhhhhhhhhhh..eeeeee..ee......hhhhhhhhhhhhhhh......................ee....hhhhhhhhhhhhhhhhhh.....eee.................hhhhhhhhhhhhhhhhhhhhhhhhh.....ee.....hhhhh.eee......hhhhhhhhhhhhhhhhhh....ee...........hhhhhhhhhhhhhh...eee.............hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhh............eee...eee.........eeeeee...eeee.....eee..eeeeee.......eeee...eeeeee..................eeeeee....eeeeeeee.....eeeeeeeeeehhh.eeeeee......eeeeee.....eeee..ee.....hhhhhhhh..eeeee....eeeeee......eeeeee......ee.hhheee..eee..........eeee......eeeeeee.....eeeeeeeeee.....eeeeeee..eeeeeee.........eeeeeeeee...eeeeeee........eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4kwu A   33 DGEYHSPYGDDDLYTVQPTERSPRDPKAGEDVILNITTWPIENGQDVWVEWTKNGVAQENVTAAYDYNSGNNTYWKADLGKFEKGDEITYTTKGSTNGGTAYESGPFTFYVTDWEYVQDVTSVVDNGDSITLNmTATAGDFSPKLYLSFEDLDTLRmELSPTGKETGHAGKSGYTVEDTAEKVTVTTEDLSIEIQKSPYRmEVHQADGTLLTSEYTTANSLGWLTDGKNVINQYQNNFmTPSDEAFYGFGERYDTINQRGKDVETYVYNEYQDQAQTERTYLAVPFFVSANKYGmYVNSDFHSQFQmASKVEDKYSFVLDNDGDmTNmLDYYVISGKDQNDIVNNYTDITGKTTLLPKWAFGLWmSANEWDRESDVSSALSNAKANDIPATGFVLEQWSDEETYYIWNNATYTAKKNGEAFSYDDFTFNGKWTDPKGmVDSVHDAGmNIVLWQVPVLKDDGTVYEQRDNDEEYmISQGYSADDGTGAPYRVPASQWFGNGILLDFTNKDAVDWWTSQREYLLTEVGIDGFKTDGGEmVWGRDTTFSNGEKGQEmRNRYPTDYVSSYFDFAKSINPEAVSFSRSGTSGAQKSGIYWSGDQTSTFDSFQASLKAGLSASTSGVSYWAWDmAGFTGDYPTAELYKRATAmAAFAPImQFHSEKSDPSPSEERSPWNAVARTGDETILPTFQKYLYTRmNLLPYIYTAAKDTADNGKSmmRQmAmDYPEDVNARDLDEQYmFGDDLLVAPIVQEGQTEKEVYLPEGEWVDIWNGGVHPGGETISYYADVDTLPVFAKAGAIIPmNmTDGYQLGQNVGNDLKSYDNLTFRVYPSGDSEYSFYDDVNGGEmRDISVSEDFANEKVSVDLPAmADETTmQVFSTEPTSVTIDGADVAKADTLDAFNEATTGYYYDTVQNLTYVKAAAKDAKQAIVLNGVNHAPYEAEFGHLTNVTTASDHAGYTGTGFVAGFDAEKEAVEFDIDAVDGASDYTmEVRYSAGVEDATRTVYINGKKQQITLPKTANWDTWNTVEVPVTLQAGNNQVVFDFEADDTAGINFDHVVIKK 1091
                                    42        52        62        72        82        92       102       112       122       132       142       152       162   |   172       182      |192       202       212       222       232|      242       252       262       272       282       292       302       312       322    |  332      |342       352    |  362       372       382       392    |  402       412       422       432       442       452       462       472      |482       492       502   |   512       522       532       542       552       562      |572       582   |   592       602       612       622       632       642       652       662       672      |682   |   692       702       712       722    |  732       742    || 752|      762      |772       782       792       802       812       822       832 |     842       852       862       872    |  882       892     | 902 |     912       922       932       942       952       962       972       982       992      1002      1012      1022      1032      1042      1052      1062      1072      1082         
                                                                                                                                                               166-MSE                189-MSE                                     233-MSE                               271-MSE                                                 327-MSE     339-MSE           357-MSE                                 397-MSE                                                                  470-MSE  479-MSE                    506-MSE                                                        569-MSE          586-MSE                                                                   660-MSE            679-MSE  |                                      727-MSE             747-MSE |             769-MSE                                                        832-MSE                                      877-MSE              898-MSE |                                                                                                               1019-MSE                                                                    
                                                                                                                                                                                                                                                                                                                                                                 360-MSE                                                                                                                                                                                                                                                                                                                               686-MSE                                                       748-MSE|                                                                              834-MSE                                                               904-MSE                                                                                                                                                                                       
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        751-MSE                                                                                                                                                                                                                                                                                                                                                
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          753-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KWU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KWU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KWU)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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        Q8Y4J2_LISMO | Q8Y4J2: 4kmq 5f7u 5hpo 5hxm 5i0d

(-) Related Entries Specified in the PDB File

4kmq 1.9 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN LMO2446 FROM LISTERIA MONOCYTOGENES EGD-E RELATED ID: IDP05250 RELATED DB: TARGETTRACK