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(-) Description

Title :  CRYSTAL STRUCTURE OF NQRA IN SPACEGROUP P21
 
Authors :  G. Fritz
Date :  06 Aug 14  (Deposition) - 03 Dec 14  (Release) - 17 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Sodium Translocation, Rossmann Fold, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Steuber, G. Vohl, M. S. Casutt, T. Vorburger, K. Diederichs, G. Frit
Structure Of The V. Cholerae Na+-Pumping Nadh:Quinone Oxidoreductase.
Nature V. 516 62 2014
PubMed-ID: 25471880  |  Reference-DOI: 10.1038/NATURE14003

(-) Compounds

Molecule 1 - NA(+)-TRANSLOCATING NADH-QUINONE REDUCTASE SUBUNIT A
    Chains: A, B
    EC Number: 1.6.5.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 1-357
    Gene: NQRA, VC_2295
    Organism Scientific: VIBRIO CHOLERAE
    Organism Taxid: 666
    Strain: ATCC 39315 / EL TOR INABA N16961
    Synonym: NA(+)-TRANSLOCATING NQR SUBUNIT A,NQR COMPLEX SUBUNIT A,NQR- 1 SUBUNIT A

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4U9Q)

(-) Sites  (0, 0)

(no "Site" information available for 4U9Q)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4U9Q)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Arg A:135 -Pro A:136
2Arg B:135 -Pro B:136
3Gly B:214 -Pro B:215

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4U9Q)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4U9Q)

(-) Exons   (0, 0)

(no "Exon" information available for 4U9Q)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:304
                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.....eeeee........eee......ee....eeeee......eee....eeeeeeee.hhh.eeeeeeee...........hhhhhhhhhhhhhhhhhhhhhhhhhheee.............eeeee.........hhhhhhhhhhhhhhhhhhhhhhhh..eeeeee............eeeee...eeee......eeeeehhhhhhhhhhhhhh....eeeeeee.......eeeeee...hhhhhh........eeeee......ee.hhhhh.......eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u9q A  14 AGTPSQVISDGKAIKKVALLGEEYVGMRPTMHVRVGDEVKKAQILFEDKKNPGVKFTSPVSGKVVEINRGAKRVLQSVVIEVAGDDQVTFDKFEANQLASLNRDAIKTQLVESGLWTAFRTRPFSKVPAIDSTSEAIFVTAMDTNPLAAEPTVVINEQSEAFVAGLDVLSALTTGKVYVCKKGTSLPRSQQPNVEEHVFDHFLYPVSADHVAWSINYQDVIAVGQLFLTGELYTQRVVSLAGPVVNKPRLVRTVMGASLEQLVDSEIMPGEVRIISGSVLSGTKATGPHAYLGRYHLQVSVLRE 329
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213|      235       245       255       265       275       285       295       305       315       325    
                                                                                                                                                                                                                                 213|                                                                                                       
                                                                                                                                                                                                                                  226                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:303
                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.....eeeee........eee......ee....eeeee......eee....eeeeeeee.hhh.eeeeeeee...........hhhhhhhhhhhhhhhhhhhhhhhhhheee.............eeeee.........hhhhhhhhhhhhhhhhhhhhhhhh..eeeeee............eeeeeeeeee.......eeeeehhhhhhhhhhhhh.....eeeeeee.......eeeeee...hhhhhh........eeeee......ee.hhhhh.......eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u9q B  15 GTPSQVISDGKAIKKVALLGEEYVGMRPTMHVRVGDEVKKAQILFEDKKNPGVKFTSPVSGKVVEINRGAKRVLQSVVIEVAGDDQVTFDKFEANQLASLNRDAIKTQLVESGLWTAFRTRPFSKVPAIDSTSEAIFVTAMDTNPLAAEPTVVINEQSEAFVAGLDVLSALTTGKVYVCKKGTSLPRSQQPNVEEHVFDGPHPASADHVAWSINYQDVIAVGQLFLTGELYTQRVVSLAGPVVNKPRLVRTVMGASLEQLVDSEIMPGEVRIISGSVLSGTKATGPHAYLGRYHLQVSVLREG 330
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214   ||  237       247       257       267       277       287       297       307       317       327   
                                                                                                                                                                                                                                     218|                                                                                                  
                                                                                                                                                                                                                                      232
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4U9Q)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4U9Q)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4U9Q)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

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  Sites
(no "Sites" information available for 4u9q)
 
  Cis Peptide Bonds
    Arg A:135 - Pro A:136   [ RasMol ]  
    Arg B:135 - Pro B:136   [ RasMol ]  
    Gly B:214 - Pro B:215   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NQRA_VIBCH | Q9KPS1: 4p6v 4u9o

(-) Related Entries Specified in the PDB File

4u9o NQRA IN SPACEGROUP P21