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(-) Description

Title :  CRYSTAL STRUCTURE OF NQRA FROM VIBRIO CHOLERAE
 
Authors :  G. Fritz
Date :  06 Aug 14  (Deposition) - 03 Dec 14  (Release) - 17 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Sodium Translocation, Rossmann Fold, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Steuber, G. Vohl, M. S. Casutt, T. Vorburger, K. Diederichs, G. Frit
Structure Of The V. Cholerae Na+-Pumping Nadh:Quinone Oxidoreductase.
Nature V. 516 62 2014
PubMed-ID: 25471880  |  Reference-DOI: 10.1038/NATURE14003

(-) Compounds

Molecule 1 - NA(+)-TRANSLOCATING NADH-QUINONE REDUCTASE SUBUNIT A
    Chains: A
    EC Number: 1.6.5.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Gene: NQRA, VC_2295
    Organism Scientific: VIBRIO CHOLERAE
    Organism Taxid: 666
    Strain: ATCC 39315 / EL TOR INABA N16961
    Synonym: NA(+)-TRANSLOCATING NQR SUBUNIT A,NQR COMPLEX SUBUNIT A,NQR- 1 SUBUNIT A

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1DTT1Ligand/Ion2,3-DIHYDROXY-1,4-DITHIOBUTANE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:154 , THR A:156 , CYS A:192 , PHE A:211binding site for residue DTT A 401

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:192 -A:401

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Arg A:134 -Pro A:135
2Gly A:213 -Pro A:214
3His A:215 -Pro A:216

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4U9O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4U9O)

(-) Exons   (0, 0)

(no "Exon" information available for 4U9O)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:303
                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee.....eeeehhhhh....eee......ee....eeeee......eee....eeeeeeee.hhh.eeeeeeee...........hhhhhhhhhhhhhhhhhhhhhhhhhheee.............eeeeee........hhhhhhhhhhhhhhhhhhhhhhhh..eeeeee............eeeee.........eeeeehhhhhhhhhhhhhh....eeeeeee.......eeeeee...hhhhhh........eeeeee....eee.hhhhh.......eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u9o A  11 PIAGTPSQVISDGKAIKKVALLGEEYVGMRPTMHVRVGDEVKKAQILFEDKKNPGVKFTSPVSGKVVEINRGAKRVLQSVVIEVAGDDQVTFDKFEANQLASLNRDAIKTQLVESGLWTAFRTRPFSKVPAIDSTSEAIFVTAMDTNPLAAEPTVVINEQSEAFVAGLDVLSALTTGKVYVCKKGTSLPRSQQPNVEEHVFDGPHPDHVAWSINYQDVIAVGQLFLTGELYTQRVVSLAGPVVNKPRLVRTVMGASLEQLVDSEIMPGEVRIISGSVLSGTKATGPHAYLGRYHLQVSVLREG 329
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210     ||236       246       256       266       276       286       296       306       316       326   
                                                                                                                                                                                                                                       216|                                                                                                
                                                                                                                                                                                                                                        233
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4U9O)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4U9O)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4U9O)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  4u9o
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  1.6.5.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NQRA_VIBCH | Q9KPS1: 4p6v 4u9q

(-) Related Entries Specified in the PDB File

4p6v 4P6V IS PROTEIN COMPLEX CONTAINING THIS ENTRY.