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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN ADENOVIRUS 2 PROTEASE WITH A WEAK PYRIMIDINE NITRILE INHIBITOR
 
Authors :  A. Mac Sweeney, P. Grosche, D. Ellis, K. Combrink, P. Erbel, N. Hughes, F. Sirockin, S. Melkko, A. Bernardi, P. Ramage, N. Jarousse, E. Altman
Date :  08 May 14  (Deposition) - 10 Sep 14  (Release) - 10 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.59
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Adenain, Cysteine Protease, Adenovirus, Pvic Cofactor, Virus Maturation, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Mac Sweeney, P. Grosche, D. Ellis, K. Combrink, P. Erbel, N. Hughes F. Sirockin, S. Melkko, A. Bernardi, P. Ramage, N. Jarousse, E. Altman
Discovery And Structure-Based Optimization Of Adenain Inhibitors.
Acs Med. Chem. Lett. V. 5 937 2014
PubMed-ID: 25147618  |  Reference-DOI: 10.1021/ML500224T

(-) Compounds

Molecule 1 - PROTEASE
    Chains: A
    EC Number: 3.4.22.39
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: L3
    Organism Common: HADV-2
    Organism Scientific: HUMAN ADENOVIRUS 2
    Organism Taxid: 10515
    Synonym: ADENAIN,ADENOVIRUS PROTEASE,AVP,ADENOVIRUS PROTEINASE, ENDOPROTEASE
 
Molecule 2 - PRE-PROTEIN VI
    Chains: B
    Engineered: YES
    Fragment: UNP RESIDUES 240-250
    Organism Common: HADV-2
    Organism Scientific: HUMAN ADENOVIRUS 2
    Organism Taxid: 10515
    Synonym: PROTEASE COFACTOR,PVI-C
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
12UQ1Ligand/IonN-BENZYL-2-[(Z)-IMINOMETHYL]PYRIMIDINE-5-CARBOXAMIDE
2ACT1Ligand/IonACETATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:145 , THR A:146 , LEU A:149 , MET A:157 , GLN A:162 , PHE A:177 , ARG A:180 , HIS A:181binding site for residue ACT A 301
2AC2SOFTWAREGLY A:52 , VAL A:53 , GLN A:115 , SER A:119 , ALA A:120 , ALA A:121 , CYS A:122 , HOH A:509 , HOH A:530binding site for residue 2UQ A 302

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:104 -B:309

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PID)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PID)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PID)

(-) Exons   (0, 0)

(no "Exon" information available for 4PID)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:204
                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh.....eeeee.............eeeeee..hhhhh...eeeeeee....eeeee.....hhhhhhhhhh..hhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhhhhhh.........hhhhh...hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4pid A   1 MGSSEQELKAIVKDLGCGPYFLGTYDKRFPGFVSPHKLACAIVNTAGRETGGVHWMAFAWNPRSKTCYLFEPFGFSDQRLKQVYQFEYESLLRRSAIASSPDRCITLEKSTQSVQGPNSAACGLFCCMFLHAFANWPQTPMDHNPTMNLITGVPNSMLNSPQVQPTLRRNQEQLYSFLERHSPYFRSHSAQIRSATSFCHLKNM 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200    


Chain B from PDB  Type:PROTEIN  Length:11
                                           
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author ...eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                 4pid B 300 GVQSLKRRRCF 310
                                   309
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PID)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PID)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PID)

(-) Gene Ontology  (17, 19)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CAP6_ADE02 | P03274: 1avp 1nln 4pie 5fgy
        PRO_ADE02 | P03252: 1avp 1nln 4ekf 4pie 5fgy

(-) Related Entries Specified in the PDB File

1nln 1NLN CONTAINS THE UNINHIBITED ADENOVIRUS 2 PROTEASE.
4pie