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(-) Description

Title :  STRUCTURE OF HUMAN ADENOVIRUS 2 PROTEASE WITH COFACTOR PVIC
 
Authors :  R. R. Davis, P. Martinez, T. Hollis
Date :  21 Dec 15  (Deposition) - 13 Jan 16  (Release) - 13 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Protease, Cofactor, Complex, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. R. Davis, P. Martinez, T. Hollis
Structure Of Human Adenovirus 2 Protease With Cofactor Pvic
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROTEASE
    Chains: A
    EC Number: 3.4.22.39
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Gene: L3
    Organism Common: HADV-2
    Organism Scientific: HUMAN ADENOVIRUS C SEROTYPE 2
    Organism Taxid: 10515
    Synonym: ADENAIN,ADENOVIRUS PROTEASE,AVP,ADENOVIRUS PROTEINASE, ENDOPROTEASE
 
Molecule 2 - PVIC
    Chains: B
    Engineered: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5FGY)

(-) Sites  (0, 0)

(no "Site" information available for 5FGY)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:104 -B:214

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FGY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FGY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FGY)

(-) Exons   (0, 0)

(no "Exon" information available for 5FGY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:203
                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhh.....eeeee.............eeeeee..hhhhh...eeeeeee....eeeee.....hhhhhhhhhh..hhhhhhhhhhhhh...eeeeeee.ee.......hhhhhhhhhhhhhhhh.........hhhhh..ee.hhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fgy A   2 GSSEQELKAIVKDLGCGPYFLGTYDKRFPGFVSPHKLACAIVNTAGRETGGVHWMAFAWNPRSKTCYLFEPFGFSDQRLKQVYQFEYESLLRRSAIASSPDRCITLEKSTQSVQGPNSAACGLFCCMFLHAFANWPQTPMDHNPTMNLITGVPNSMLNSPQVQPTLRRNQEQLYSFLERHSPYFRSHSAQIRSATSFCHLKNM 204
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201   


Chain B from PDB  Type:PROTEIN  Length:11
                                           
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author ...eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                 5fgy B 205 GVQSLKRRRCF 215
                                   214
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FGY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FGY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FGY)

(-) Gene Ontology  (17, 19)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CAP6_ADE02 | P03274: 1avp 1nln 4pid 4pie
        PRO_ADE02 | P03252: 1avp 1nln 4ekf 4pid 4pie

(-) Related Entries Specified in the PDB File

1avp SAME COMPLEX AS 1AVP BUT WITH BETTER RESOLUTION.