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(-) Description

Title :  STRUCTURAL BASIS FOR ZN2+-DEPENDENT INTERCELLULAR ADHESION IN STAPHYLOCOCCAL BIOFILMS
 
Authors :  D. G. Conrady, J. J. Wilson, A. B. Herr
Date :  28 Jun 12  (Deposition) - 16 Jan 13  (Release) - 30 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.97
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Hydrophilic Protein, Non-Globular, Freestanding Beta Sheet, Intercellular Adhesion, Zinc Dependent Dimer, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. G. Conrady, J. J. Wilson, A. B. Herr
Structural Basis For Zn2+-Dependent Intercellular Adhesion In Staphylococcal Biofilms.
Proc. Natl. Acad. Sci. Usa V. 110 E202 2013
PubMed-ID: 23277549  |  Reference-DOI: 10.1073/PNAS.1208134110

(-) Compounds

Molecule 1 - ACCUMULATION ASSOCIATED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PH596
    Expression System Strain: BLR
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 2017-2223
    Gene: AAP, SERP2398
    Organism Scientific: STAPHYLOCOCCUS EPIDERMIDIS
    Organism Taxid: 176279
    Strain: RP62A

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1SCN1Ligand/IonTHIOCYANATE ION
2ZN1Ligand/IonZINC ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1SCN2Ligand/IonTHIOCYANATE ION
2ZN-1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:19 , HIS A:75 , ASP A:149 , SCN A:302BINDING SITE FOR RESIDUE ZN A 301
2AC2SOFTWAREGLU A:19 , ILE A:73 , HIS A:75 , ASP A:149 , ASN A:151 , ZN A:301BINDING SITE FOR RESIDUE SCN A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FUO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FUO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FUO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FUO)

(-) Exons   (0, 0)

(no "Exon" information available for 4FUO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:206
                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee...eeeee........eeeee....eeeeeee.eee......ee....eeeeee....eeeee..eee...eeeee........eeee....eee......eee....eeeee..ee...eeeeeee...eeeee........eeeee....eeeeeee.eee......eeee...eeeeee....eeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fuo A   1 VDGDPITSTEEIPFDKKREFDPNLAPGTEKVVQKGEPGTKTITTPTTKNPLTGEKVEGEPTEKITKQPVDEIVHYGGEQIPQGHKDEFDPNAPVDSKTEVPGKPGVKNPDTGEVVTPPVDDVTKYGPVDGDSITSTEEIPFDKKREFDPNLAPGTEKVVQKGEPGTKTITTPTTKNPLTGEKVGEGKSTEKVTKQPVDEIVEYGPT 207
                                    10        20        30        40        50     || 61        71        81        91       101       111       121       131       141       151       161       171       181       191       201      
                                                                                  56|                                                                                                                                                     
                                                                                   58
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FUO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FUO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FUO)

(-) Gene Ontology  (4, 4)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5HKE8_STAEQ | Q5HKE8: 4fum 4fun 4fup 5tu7 5tu8 5tu9

(-) Related Entries Specified in the PDB File

4fum 4fun 4fup