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(-) Description

Title :  STRUCTURAL BASIS FOR ZN2+-DEPENDENT INTERCELLULAR ADHESION IN STAPHYLOCOCCAL BIOFILMS
 
Authors :  D. G. Conrady, J. J. Wilson, A. B. Herr
Date :  28 Jun 12  (Deposition) - 16 Jan 13  (Release) - 30 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.51
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  B  (2x)
Keywords :  Hydrophilic Protein, Non-Globular, Freestanding Beta Sheet, Zinc Dependent Dimer, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. G. Conrady, J. J. Wilson, A. B. Herr
Structural Basis For Zn2+-Dependent Intercellular Adhesion In Staphylococcal Biofilms.
Proc. Natl. Acad. Sci. Usa V. 110 E202 2013
PubMed-ID: 23277549  |  Reference-DOI: 10.1073/PNAS.1208134110

(-) Compounds

Molecule 1 - ACCUMULATION ASSOCIATED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PH596
    Expression System Strain: BLR
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 2017-2223
    Gene: AAP, SERP2398
    Mutation: YES
    Organism Scientific: STAPHYLOCOCCUS EPIDERMIDIS
    Organism Taxid: 176279
    Strain: RP62A

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): A 
Biological Unit 2 (2x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:75 , ASP A:149 , GLU A:203 , HOH A:455BINDING SITE FOR RESIDUE ZN A 301
2AC2SOFTWAREASP B:21 , HIS B:75 , GLU B:203 , HOH B:428BINDING SITE FOR RESIDUE ZN B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FUP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FUP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FUP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FUP)

(-) Exons   (0, 0)

(no "Exon" information available for 4FUP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:199
                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee...eeeee........eeeee....eeeeeee.ee....ee...eeeeee....eeeee..eee...eeeee........eeee....eee......eee....eeeee..ee...eeeeeee...eeeee........eeeee....eeeeeee.eee......eeee...eeeeee....eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fup A   4 DPITSTEEIPFDKKREFDPNMAPGTEKVVQKGEPGTKTITTPTTKNKVGEGEPTEKITKQPVDEIVHYGGEQIPQGHKDEFDPNAPVDSKTEVPGKPGVKNPDTGEVVTPPVDDVTKYGPVDGDSITSTEEIPFDKKREFDPNMAPGTEKVVQKGEPGTKTITTPTTKNPMTGEKVGEGKSTEKVTKQPVDEIVEYGPT 207
                                    13        23        33        43     || 58        68        78        88        98       108       118       128       138       148       158       168       178       188       198         
                                                                        49|                                                                                                                                                        
                                                                         55                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:195
                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee...eeeee........eeeee....eeeeeee........eeeeee....eeeee..eee...eeeee........eeee....eee......eee....eeeee..ee...eeeeeee...eeeee........eeeee....eeeeeee.eee......eeee...eeeeee....eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fup B   4 DPITSTEEIPFDKKREFDPNMAPGTEKVVQKGEPGTKTITTPTTGEGEPTEKITKQPVDEIVHYGGEQIPQGHKDEFDPNAPVDSKTEVPGKPGVKNPDTGEVVTPPVDDVTKYGPVDGDSITSTEEIPFDKKREFDPNMAPGTEKVVQKGEPGTKTITTPTTKNPMTGEKVGEGKSTEKVTKQPVDEIVEYGPT 207
                                    13        23        33        43   ||   62        72        82        92       102       112       122       132       142       152       162       172       182       192       202     
                                                                      47|                                                                                                                                                      
                                                                       57
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FUP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FUP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FUP)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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        Q5HKE8_STAEQ | Q5HKE8: 4fum 4fun 4fuo 5tu7 5tu8 5tu9

(-) Related Entries Specified in the PDB File

4fum 4fun 4fuo