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(-) Description

Title :  CRYSTAL STRUCTURE OF STAPHYLOCOCCUS EPIDERMIDIS AAP G58-SPACER-G513 (VARIANT G5-SPACER-CONSENSUS G5)
 
Authors :  C. L. Shelton, D. G. Conrady, A. B. Herr
Date :  05 Nov 16  (Deposition) - 21 Dec 16  (Release) - 01 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Biofilm Intercellular Adhesion Staphylococcus Aap, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. L. Shelton, D. G. Conrady, A. B. Herr
Functional Consequences Of B-Repeat Sequence Variation In The Staphylococcal Biofilm Protein Aap: Deciphering The Assembly Code.
Biochem. J. V. 474 427 2017
PubMed-ID: 27872164  |  Reference-DOI: 10.1042/BCJ20160675

(-) Compounds

Molecule 1 - ACCUMULATION ASSOCIATED PROTEIN AAP G58-SPACER-G513 (VARIANT G5-SPACER-CONSENSUS G5)
    Atcc: 35984
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BLR(DE3)
    Expression System Taxid: 469008
    Gene: AAP, SERP2398
    Organism Scientific: STAPHYLOCOCCUS EPIDERMIDIS, STAPHYLOCOCCUS EPIDERMIDIS (STRAIN ATCC 35984 / RP62A)
    Organism Taxid: 176279
    Strain: ATCC 35984 / RP62A

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5TU9)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5TU9)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5TU9)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5TU9)

(-) Sequences/Alignments

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Chain A from PDB  Type:PROTEIN  Length:139
                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee........eeeee..............eeeee..eee...eeeee........eeee....eee......eee....eeeee..eeeeeeeeeeee..eeeeeeeeeee......eeee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tu9 A  11 EIPFDKKREFNPDLKPGEERVKQKGEPGTKITKQPVDEITEYGGEEIKPGHKDEFDPNAPKGSQEDVPGKPGVKNPDTGEVVTPPVDDVTKYGPVDGDSITSTEEIPPGTKTITTPTTKNPLTGEKVGEGKSTEKVTKQ 196
                                    20        30        40|       74        84        94       104       114       124       134      |167       177       187         
                                                        40|                                                                         141|                               
                                                         65                                                                          165                               


Chain B from PDB  Type:PROTEIN  Length:137
                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee........eee....eee..eee...eeeee........eeee....eee......eee....eeeee..ee...eeeeeee...ee........eeeeeee.eee......eeee...eeeeee....ee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5tu9 B  17 KREFNPDLKPGEERVKQEITEYGGEEIKPGHKDEFDPNAPKGSQEDVPGKPGVKNPDTGEVVTPPVDDVTKYGPVDGDSITSTEEIPFDKKRVVQKGEPGTKTITTPTTKNPLTGEKVGEGKSTEKVTKQPVDEIVE 203
                                    26      ||74        84        94       104       114       124       134       144 ||    166       176       186       196       
                                           33|                                                                       146|                                            
                                            72                                                                        159
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5TU9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5TU9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5TU9)

(-) Gene Ontology  (4, 4)

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 Related Entries

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UniProtKB/TrEMBL
        Q5HKE8_STAEQ | Q5HKE8: 4fum 4fun 4fuo 4fup 5tu7 5tu8

(-) Related Entries Specified in the PDB File

5tu7 5tu8