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(-) Description

Title :  CRYSTAL STRUCTURE ANALYSIS OF MANGANESE TREATED P19 PROTEIN FROM CAMPYLOBACTER JEJUNI AT 1.41 A AT PH 9
 
Authors :  T. I. Doukov, A. C. K. Chan, M. Scofield, A. B. Ramin, S. A. L. Tom-Yew, M. E
Date :  01 Mar 10  (Deposition) - 21 Jul 10  (Release) - 25 Aug 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.41
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Copper Binding, Iron Transport, Iron Uptake, P19 Delition, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. C. Chan, T. I. Doukov, M. Scofield, S. A. Tom-Yew, A. B. Ramin, J. K. Mackichan, E. C. Gaynor, M. E. Murphy
Structure And Function Of P19, A High-Affinity Iron Transporter Of The Human Pathogen Campylobacter Jejuni.
J. Mol. Biol. V. 401 590 2010
PubMed-ID: 20600116  |  Reference-DOI: 10.1016/J.JMB.2010.06.038

(-) Compounds

Molecule 1 - P19 PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET19
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 22-179
    Gene: CJJ81176_1650, GENE CJ81176_1659
    Organism Scientific: CAMPYLOBACTER JEJUNI
    Organism Taxid: 354242
    Strain: 81-176

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1CU2Ligand/IonCOPPER (II) ION
2MN2Ligand/IonMANGANESE (II) ION
3SO42Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:42 , MET A:88 , HIS A:95 , HIS B:132BINDING SITE FOR RESIDUE CU A 200
2AC2SOFTWAREGLU A:3 , GLU A:44 , ASP A:92 , LYS A:106 , HOH A:1085 , HOH A:1108BINDING SITE FOR RESIDUE MN A 201
3AC3SOFTWAREGLY A:7 , ASP A:8 , LYS A:10 , TYR A:150 , LYS A:151BINDING SITE FOR RESIDUE SO4 A 300
4AC4SOFTWAREHIS A:132 , HIS B:42 , GLU B:44 , MET B:88 , HIS B:95BINDING SITE FOR RESIDUE CU B 200
5AC5SOFTWAREGLU B:44 , ASP B:46 , HOH B:1017 , HOH B:1021 , HOH B:1137 , HOH B:1147BINDING SITE FOR RESIDUE MN B 201
6AC6SOFTWAREGLY B:7 , ASP B:8 , LYS B:10 , ASP B:149 , TYR B:150 , LYS B:151BINDING SITE FOR RESIDUE SO4 B 300

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3LZQ)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Glu A:28 -Pro A:29
2Glu B:28 -Pro B:29

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3LZQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3LZQ)

(-) Exons   (0, 0)

(no "Exon" information available for 3LZQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:157
 aligned with A0A0H3PA01_C | A0A0H3PA01 from UniProtKB/TrEMBL  Length:179

    Alignment length:157
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       
         A0A0H3PA01_C    22 GEVPIGDPKELNGMEIAAVYLQPIEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKRGTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVGKWFEPFKVDYKFKYTGTP 178
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee..eeeeeeee....ee......hhhhh.eeeeeeeee.................eeeeeeee.....eeeee.eeeee..eeeeeeee............eeeeeeeeeehhhhhh.eee.............eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lzq A   2 GEVPIGDPKELNGMEIAAVYLQPIEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKRGTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVGKWFEPFKVDYKFKYTGTP 158
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       


Chain B from PDB  Type:PROTEIN  Length:159
 aligned with A0A0H3PA01_C | A0A0H3PA01 from UniProtKB/TrEMBL  Length:179

    Alignment length:159
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170         
         A0A0H3PA01_C    21 AGEVPIGDPKELNGMEIAAVYLQPIEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKRGTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVGKWFEPFKVDYKFKYTGTPK 179
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee..eeeeeeee....ee......hhhhh.eeeeeeeee.................eeeeeeee.....eeeeeeeeeee..eeeeeeee............eeeeeeeeeehhhhhh.eee.............eeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lzq B   1 GGEVPIGDPKELNGMEIAAVYLQPIEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKRGTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVGKWFEPFKVDYKFKYTGTPK 159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3LZQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3LZQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3LZQ)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3LZQ)

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  Cis Peptide Bonds
    Glu A:28 - Pro A:29   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A0H3PA01_C | A0A0H3PA01: 3lzl 3lzn 3lzo 3lzp 3lzr 4nwn 5i0v 5i0w

(-) Related Entries Specified in the PDB File

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3lzp CRYSTAL STRUCTURE ANALYSIS OF THE 'AS-ISOLATED' P19 PROTEIN FROM CAMPYLOBACTER JEJUNI AT 1.65 A AT PH 9
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