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Asym./Biol. Unit (Jmol Viewer)

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Title :   CRYSTAL STRUCTURE ANALYSIS OF MANGANESE TREATED P19 PROTEIN FROM CAMPYLOBACTER JEJUNI AT 2.73 A AT PH 9 AND MANGANESE PEAK WAVELENGTH (1.893 A)

Authors :   T. I. Doukov, A. C. K. Chan, M. Scofield, A. B. Ramin, S. A. L. Tom-Yew, M. E

Date :   01 Mar 10 (Deposition) - 21 Jul 10 (Release) - 25 Aug 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.73

Chains :   Asym./Biol. Unit : A,B

Keywords :   Copper Binding, Iron Transport, Iron Uptake, P19 Delition, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. C. Chan, T. I. Doukov, M. Scofield, S. A. Tom-Yew, A. B. Ramin, J. K. Mackichan, E. C. Gaynor, M. E. Murphy
Structure And Function Of P19, A High-Affinity Iron Transporter Of The Human Pathogen Campylobacter Jejuni.
J. Mol. Biol. V. 401 590 2010
PubMed-ID: 20600116 | Reference-DOI: 10.1016/J.JMB.2010.06.038

Molecule 1 - P19 PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET19
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 22-179
	Gene	:	CJJ81176_1650, GENE CJ81176_1659
	Organism Scientific	:	CAMPYLOBACTER JEJUNI
	Organism Taxid	:	354242
	Strain	:	81-176

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 6)

No.	Name	Count	Type	Full Name
1	CU	2	Ligand/Ion	COPPER (II) ION
2	MN	2	Ligand/Ion	MANGANESE (II) ION
3	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:42 , MET A:88 , HIS A:95 , HIS B:132	BINDING SITE FOR RESIDUE CU A 200
2	AC2	SOFTWARE	GLU A:3 , GLU A:44 , ASP A:92 , LYS A:106	BINDING SITE FOR RESIDUE MN A 201
3	AC3	SOFTWARE	ASP A:8 , LYS A:10 , ASP A:149 , TYR A:150 , LYS A:151	BINDING SITE FOR RESIDUE SO4 A 300
4	AC4	SOFTWARE	HIS A:132 , HIS B:42 , MET B:88 , HIS B:95	BINDING SITE FOR RESIDUE CU B 200
5	AC5	SOFTWARE	GLU B:3 , GLU B:44 , ASP B:46 , ASP B:92	BINDING SITE FOR RESIDUE MN B 201
6	AC6	SOFTWARE	GLY B:7 , ASP B:8 , LYS B:10 , ASP B:149 , TYR B:150 , LYS B:151	BINDING SITE FOR RESIDUE SO4 B 300

(no "SS Bond" information available for 3LZR)

Asymmetric/Biological Unit

No.	Residues
1	Glu A:28	-	Pro A:29
2	Glu B:28	-	Pro B:29

(no "SAP(SNP)/Variant" information available for 3LZR)

(no "PROSITE Motif" information available for 3LZR)

(no "Exon" information available for 3LZR)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:158
 aligned with A0A0H3PA01_C | A0A0H3PA01 from UniProtKB/TrEMBL  Length:179

    Alignment length:158
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171        
         A0A0H3PA01_C    22 GEVPIGDPKELNGMEIAAVYLQPIEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKRGTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVGKWFEPFKVDYKFKYTGTPK 179
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee....eee..eeeeeeee....ee............eeeeeeeee.................eeeeeeee.....eeeeeeeeeee..eeeeeeee............eeeeeeeeeehhhhhh.eee.............eeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lzr A   2 GEVPIGDPKELNGMEIAAVYLQPIEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKRGTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVGKWFEPFKVDYKFKYTGTPK 159
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151

Chain B from PDB  Type:PROTEIN  Length:158
 aligned with A0A0H3PA01_C | A0A0H3PA01 from UniProtKB/TrEMBL  Length:179

    Alignment length:158
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171        
         A0A0H3PA01_C    22 GEVPIGDPKELNGMEIAAVYLQPIEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKRGTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVGKWFEPFKVDYKFKYTGTPK 179
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee....eee..eeeeeeee....ee......hhhhh.eeeeeeeee.................eeeeeeee.....eeeee.eeeee..eeeeeeee............eeeeeeeeeehhhhhh.eee.............eeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lzr B   2 GEVPIGDPKELNGMEIAAVYLQPIEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKRGTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVGKWFEPFKVDYKFKYTGTPK 159
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3LZR)

(no "CATH Domain" information available for 3LZR)

(no "Pfam Domain" information available for 3LZR)

Asymmetric/Biological Unit(hide GO term definitions)

(no "Gene Ontology" information available for 3LZR)

Asymmetric/Biological Unit
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	Ligands, Modified Residues, Ions
		CU	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Glu A:28 - Pro A:29	[ RasMol ]
		Glu B:28 - Pro B:29	[ RasMol ]

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UniProtKB/TrEMBL
	A0A0H3PA01_C \| A0A0H3PA01	:	3lzl 3lzn 3lzo 3lzp 3lzq 4nwn 5i0v 5i0w

2o6c	STRUCTURE OF SELENOMETHIONYL RTP34 FROM TREPONEMA PALLIDUM
2o6d	STRUCTURE OF NATIVE RTP34 FROM TREPONEMA PALLIDUM
2o6e	STRUCTURE OF NATIVE RTP34 FROM TREPONEMA PALLIDUM FROM ZINC -SOAKED CRYSTALS
2o6f	STRUCTURE OF METAL- FREE RTP34 FROM TREPONEMA PALLIDUM
3lzl	CRYSTAL STRUCTURE ANALYSIS OF THE AS-ISOLATED P19 PROTEIN FROM CAMPYLOBACTER JEJUNI AT 1.45 A AT PH 9.0
3lzn	CRYSTAL STRUCTURE ANALYSIS OF THE APO P19 PROTEIN FROM CAMPYLOBACTER JEJUNI AT 1.59 A AT PH 9
3lzo	CRYSTAL STRUCTURE ANALYSIS OF THE COPPER-RECONSTITUTED P19 PROTEIN FROM CAMPYLOBACTER JEJUNI AT 1.65 A AT PH 10.0
3lzp	CRYSTAL STRUCTURE ANALYSIS OF THE 'AS-ISOLATED' P19 PROTEIN FROM CAMPYLOBACTER JEJUNI AT 1.65 A AT PH 9
3lzq	CRYSTAL STRUCTURE ANALYSIS OF MANGANESE TREATED P19 PROTEIN FROM CAMPYLOBACTER JEJUNI AT 1.41 A AT PH 9

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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