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(-) Description

Title :  STRUCTURE OF IPNV SUBVIRAL PARTICLE
 
Authors :  F. Coulibaly, C. Chevalier, B. Delmas, F. A. Rey
Date :  21 Jul 09  (Deposition) - 29 Dec 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.35
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A,B,C,D,E  (12x)
Keywords :  Jelly Roll, Beta Sandwich, Icosahedral Particle, Virion, Virus Like Particle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Coulibaly, C. Chevalier, B. Delmas, F. A. Rey
Crystal Structure Of An Aquabirnavirus Particle: Insights Into Antigenic Diversity And Virulence Determinism
J. Virol. V. 84 1792 2010
PubMed-ID: 20007275  |  Reference-DOI: 10.1128/JVI.01536-09

(-) Compounds

Molecule 1 - CAPSID PROTEIN VP2
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Strain: SF9
    Expression System Taxid: 7108
    Expression System Vector: PFASTBAC1
    Expression System Vector Type: BACULOVIRUS
    Gene: VP2
    Organism Common: IPNV
    Organism Scientific: INFECTIOUS PANCREATIC NECROSIS VIRUS -
    Organism Taxid: 11005
    Strain: SP
    Synonym: PP

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (12x): ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2CO3Ligand/IonCOBALT (II) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2CO-1Ligand/IonCOBALT (II) ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:27 , ASP B:27 , ASP D:27BINDING SITE FOR RESIDUE CO A 443
2AC2SOFTWAREALA A:200 , ALA B:200 , ALA D:200BINDING SITE FOR RESIDUE CL A 444
3AC3SOFTWAREASP C:27BINDING SITE FOR RESIDUE CO C 443
4AC4SOFTWAREALA C:200BINDING SITE FOR RESIDUE CL C 444
5AC5SOFTWAREASP E:27BINDING SITE FOR RESIDUE CO E 443
6AC6SOFTWAREALA E:200BINDING SITE FOR RESIDUE CL E 444

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3IDE)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Arg A:348 -Pro A:349
2Arg B:348 -Pro B:349
3Arg C:348 -Pro C:349
4Arg D:348 -Pro D:349
5Arg E:348 -Pro E:349

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (23, 115)

Asymmetric Unit (23, 115)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_POLS_IPNVS_001 *Q36PPOLS_IPNVS  ---  ---A/B/C/D/EQ36P
02UniProtVAR_POLS_IPNVS_002 *S46PPOLS_IPNVS  ---  ---A/B/C/D/ES46P
03UniProtVAR_POLS_IPNVS_003 *V52IPOLS_IPNVS  ---  ---A/B/C/D/EV52I
04UniProtVAR_POLS_IPNVS_004 *V54IPOLS_IPNVS  ---  ---A/B/C/D/EV54I
05UniProtVAR_POLS_IPNVS_005 *V152APOLS_IPNVS  ---  ---A/B/C/D/EV152A
06UniProtVAR_POLS_IPNVS_006 *K192RPOLS_IPNVS  ---  ---A/B/C/D/EK192R
07UniProtVAR_POLS_IPNVS_007 *I199TPOLS_IPNVS  ---  ---A/B/C/D/EI199T
08UniProtVAR_POLS_IPNVS_008 *R212SPOLS_IPNVS  ---  ---A/B/C/D/ER212S
09UniProtVAR_POLS_IPNVS_009 *P217TPOLS_IPNVS  ---  ---A/B/C/D/EP217T
10UniProtVAR_POLS_IPNVS_010 *T219IPOLS_IPNVS  ---  ---A/B/C/D/ET219I
11UniProtVAR_POLS_IPNVS_011 *T221APOLS_IPNVS  ---  ---A/B/C/D/ET221A
12UniProtVAR_POLS_IPNVS_012 *L222PPOLS_IPNVS  ---  ---A/B/C/D/EL222P
13UniProtVAR_POLS_IPNVS_013 *N234SPOLS_IPNVS  ---  ---A/B/C/D/EN234S
14UniProtVAR_POLS_IPNVS_014 *A247TPOLS_IPNVS  ---  ---A/B/C/D/EA247T
15UniProtVAR_POLS_IPNVS_015 *Q249RPOLS_IPNVS  ---  ---A/B/C/D/EQ249R
16UniProtVAR_POLS_IPNVS_016 *D252NPOLS_IPNVS  ---  ---A/B/C/D/ED252N
17UniProtVAR_POLS_IPNVS_017 *D252VPOLS_IPNVS  ---  ---A/B/C/D/ED252V
18UniProtVAR_POLS_IPNVS_018 *K255RPOLS_IPNVS  ---  ---A/B/C/D/EK255R
19UniProtVAR_POLS_IPNVS_019 *F262LPOLS_IPNVS  ---  ---A/B/C/D/EF262L
20UniProtVAR_POLS_IPNVS_020 *V288APOLS_IPNVS  ---  ---A/B/C/D/EV288A
21UniProtVAR_POLS_IPNVS_021 *A319EPOLS_IPNVS  ---  ---A/B/C/D/EA319E
22UniProtVAR_POLS_IPNVS_022 *V323APOLS_IPNVS  ---  ---A/B/C/D/EV323A
23UniProtVAR_POLS_IPNVS_023 *V323FPOLS_IPNVS  ---  ---A/B/C/D/EV323F
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (23, 1380)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_POLS_IPNVS_001 *Q36PPOLS_IPNVS  ---  ---A/B/C/D/EQ36P
02UniProtVAR_POLS_IPNVS_002 *S46PPOLS_IPNVS  ---  ---A/B/C/D/ES46P
03UniProtVAR_POLS_IPNVS_003 *V52IPOLS_IPNVS  ---  ---A/B/C/D/EV52I
04UniProtVAR_POLS_IPNVS_004 *V54IPOLS_IPNVS  ---  ---A/B/C/D/EV54I
05UniProtVAR_POLS_IPNVS_005 *V152APOLS_IPNVS  ---  ---A/B/C/D/EV152A
06UniProtVAR_POLS_IPNVS_006 *K192RPOLS_IPNVS  ---  ---A/B/C/D/EK192R
07UniProtVAR_POLS_IPNVS_007 *I199TPOLS_IPNVS  ---  ---A/B/C/D/EI199T
08UniProtVAR_POLS_IPNVS_008 *R212SPOLS_IPNVS  ---  ---A/B/C/D/ER212S
09UniProtVAR_POLS_IPNVS_009 *P217TPOLS_IPNVS  ---  ---A/B/C/D/EP217T
10UniProtVAR_POLS_IPNVS_010 *T219IPOLS_IPNVS  ---  ---A/B/C/D/ET219I
11UniProtVAR_POLS_IPNVS_011 *T221APOLS_IPNVS  ---  ---A/B/C/D/ET221A
12UniProtVAR_POLS_IPNVS_012 *L222PPOLS_IPNVS  ---  ---A/B/C/D/EL222P
13UniProtVAR_POLS_IPNVS_013 *N234SPOLS_IPNVS  ---  ---A/B/C/D/EN234S
14UniProtVAR_POLS_IPNVS_014 *A247TPOLS_IPNVS  ---  ---A/B/C/D/EA247T
15UniProtVAR_POLS_IPNVS_015 *Q249RPOLS_IPNVS  ---  ---A/B/C/D/EQ249R
16UniProtVAR_POLS_IPNVS_016 *D252NPOLS_IPNVS  ---  ---A/B/C/D/ED252N
17UniProtVAR_POLS_IPNVS_017 *D252VPOLS_IPNVS  ---  ---A/B/C/D/ED252V
18UniProtVAR_POLS_IPNVS_018 *K255RPOLS_IPNVS  ---  ---A/B/C/D/EK255R
19UniProtVAR_POLS_IPNVS_019 *F262LPOLS_IPNVS  ---  ---A/B/C/D/EF262L
20UniProtVAR_POLS_IPNVS_020 *V288APOLS_IPNVS  ---  ---A/B/C/D/EV288A
21UniProtVAR_POLS_IPNVS_021 *A319EPOLS_IPNVS  ---  ---A/B/C/D/EA319E
22UniProtVAR_POLS_IPNVS_022 *V323APOLS_IPNVS  ---  ---A/B/C/D/EV323A
23UniProtVAR_POLS_IPNVS_023 *V323FPOLS_IPNVS  ---  ---A/B/C/D/EV323F
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3IDE)

(-) Exons   (0, 0)

(no "Exon" information available for 3IDE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:415
 aligned with POLS_IPNVS | Q703G9 from UniProtKB/Swiss-Prot  Length:972

    Alignment length:423
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425   
           POLS_IPNVS     6 ATATYLKSIMLPETGPASIPDDITERHILKQETSSYNLEVSESGSGVLVCFPGAPGSRIGAHYRWNANQTGLEFDQWLETSQDLKKAFNYGRLISRKYDIQSSTLPAGLYALNGTLNAATFEGSLSEVESLTYNSLMSLTTNPQDKVNNQLVTKGVTVLNLPTGFDKPYVRLEDETPQGLQSMNGAKMRCTAAIAPRRYEIDLPSQRLPPVPATGTLTTLYEGNADIVNSTTVTGDINFSLAEQPADETKFDFQLDFMGLDNDVPVVTVVSSVLATNDNYRGVSAKMTQSIPTENITKPITRVKLSYKINQQTAIGNVATLGTMGPASVSFSSGNGNVPGVLRPITLVAYEKMTPLSILTVAGVSNYELIPNPELLKNMVTRYGKYDPEGLNYAKMILSHREELDIRTVWRTEEYKERTRVFN 428
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh............eeeeeeeeeeee......eeeee.......eeeeeeee......eeeeeeee...hhhh.eeeeeeeeeeeeeee..--------..eeeeeee..hhhhh.....hhhhhh..hhh.eeeeee....eeee..........ee..ee.............ee......eeeeeee..............eeeeeeeeee...eeeeeeeeeee.......eeeeeeeeee........eeeeeeeee.......eeeee..eehhhhh...eeeeeeeee..hhhhh...eehhhhh.eeeeeee...........eeeeeee......eeeeeeeeeeeeeehhhhhh...........hhhhhhhhhhhh........eeehhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) ------------------------------P---------P-----I-I-------------------------------------------------------------------------------------------------A---------------------------------------R------T------------S----T-I-AP-----------S------------T-R--N--R------L-------------------------A------------------------------E---A--------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V----------------------------------------------------------------------F--------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ide A   6 ATATYLKSIMLPETGPASIPDDITERHILKQETSSYNLEVSESGSGVLVCFPGAPGSRIGAHYRWNANQTGLEFDQWLETSQDLKKAFNYGRLISRKYDIQSST--------NGTLNAATFEGSLSEVESLTYNSLMSLTTNPQDKVNNQLVTKGVTVLNLPTGFDKPYVRLEDETPQGLQSMNGAKMRCTAAIAPRRYEIDLPSQRLPPVPATGTLTTLYEGNADIVNSTTVTGDINFSLAEQPADETKFDFQLDFMGLDNDVPVVTVVSSVLATNDNYRGVSAKMTQSIPTENITKPITRVKLSYKINQQTAIGNVATLGTMGPASVSFSSGNGNVPGVLRPITLVAYEKMTPLSILTVAGVSNYELIPNPELLKNMVTRYGKYDPEGLNYAKMILSHREELDIRTVWRTEEYKERTRVFN 428
                                    15        25        35        45        55        65        75        85        95       105   |     -  |    125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425   
                                                                                                                                 109      118                                                                                                                                                                                                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:416
 aligned with POLS_IPNVS | Q703G9 from UniProtKB/Swiss-Prot  Length:972

    Alignment length:423
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425   
           POLS_IPNVS     6 ATATYLKSIMLPETGPASIPDDITERHILKQETSSYNLEVSESGSGVLVCFPGAPGSRIGAHYRWNANQTGLEFDQWLETSQDLKKAFNYGRLISRKYDIQSSTLPAGLYALNGTLNAATFEGSLSEVESLTYNSLMSLTTNPQDKVNNQLVTKGVTVLNLPTGFDKPYVRLEDETPQGLQSMNGAKMRCTAAIAPRRYEIDLPSQRLPPVPATGTLTTLYEGNADIVNSTTVTGDINFSLAEQPADETKFDFQLDFMGLDNDVPVVTVVSSVLATNDNYRGVSAKMTQSIPTENITKPITRVKLSYKINQQTAIGNVATLGTMGPASVSFSSGNGNVPGVLRPITLVAYEKMTPLSILTVAGVSNYELIPNPELLKNMVTRYGKYDPEGLNYAKMILSHREELDIRTVWRTEEYKERTRVFN 428
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh............eeeeeeeeeeee......eeeee.......eeeeeeee......eeeeeeee...hhhh.eeeeeeeeeeeeeee...-------..eeeeeee..hhhhh.....hhhhhh..hhh.eeeeee....eeee..........ee..ee.............ee......eeeeeee..............eeeeeeeeee...eeeeeeeeeee.......eeeeeeeeee........eeeeeeeee.......eeeee..eehhhhh...eeeeeeeee..hhhhh...eehhhhh.eeeeeee...........eeeeeee......eeeeeeeeeeeeeehhhhhh...........hhhhhhhhhhhh........eeehhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) ------------------------------P---------P-----I-I-------------------------------------------------------------------------------------------------A---------------------------------------R------T------------S----T-I-AP-----------S------------T-R--N--R------L-------------------------A------------------------------E---A--------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V----------------------------------------------------------------------F--------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ide B   6 ATATYLKSIMLPETGPASIPDDITERHILKQETSSYNLEVSESGSGVLVCFPGAPGSRIGAHYRWNANQTGLEFDQWLETSQDLKKAFNYGRLISRKYDIQSSTL-------NGTLNAATFEGSLSEVESLTYNSLMSLTTNPQDKVNNQLVTKGVTVLNLPTGFDKPYVRLEDETPQGLQSMNGAKMRCTAAIAPRRYEIDLPSQRLPPVPATGTLTTLYEGNADIVNSTTVTGDINFSLAEQPADETKFDFQLDFMGLDNDVPVVTVVSSVLATNDNYRGVSAKMTQSIPTENITKPITRVKLSYKINQQTAIGNVATLGTMGPASVSFSSGNGNVPGVLRPITLVAYEKMTPLSILTVAGVSNYELIPNPELLKNMVTRYGKYDPEGLNYAKMILSHREELDIRTVWRTEEYKERTRVFN 428
                                    15        25        35        45        55        65        75        85        95       105    |    -  |    125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425   
                                                                                                                                  110     118                                                                                                                                                                                                                                                                                                                      


Chain C from PDB  Type:PROTEIN  Length:415
 aligned with POLS_IPNVS | Q703G9 from UniProtKB/Swiss-Prot  Length:972

    Alignment length:423
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425   
           POLS_IPNVS     6 ATATYLKSIMLPETGPASIPDDITERHILKQETSSYNLEVSESGSGVLVCFPGAPGSRIGAHYRWNANQTGLEFDQWLETSQDLKKAFNYGRLISRKYDIQSSTLPAGLYALNGTLNAATFEGSLSEVESLTYNSLMSLTTNPQDKVNNQLVTKGVTVLNLPTGFDKPYVRLEDETPQGLQSMNGAKMRCTAAIAPRRYEIDLPSQRLPPVPATGTLTTLYEGNADIVNSTTVTGDINFSLAEQPADETKFDFQLDFMGLDNDVPVVTVVSSVLATNDNYRGVSAKMTQSIPTENITKPITRVKLSYKINQQTAIGNVATLGTMGPASVSFSSGNGNVPGVLRPITLVAYEKMTPLSILTVAGVSNYELIPNPELLKNMVTRYGKYDPEGLNYAKMILSHREELDIRTVWRTEEYKERTRVFN 428
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh............eeeeeeeeeeee......eeeee.......eeeeeeee......eeeeeeee...hhhh.eeeeeeeeeeeeeee..--------..eeeeeee..hhhhh.....hhhhhh..hhh.eeeeee....eeee..........ee..ee.............ee......eeeeeee..............eeeeeeeeee...eeeeeeeeeee.......eeeeeeeeee........eeeeeeeee.......eeeee..eehhhhh...eeeeeeeee..hhhhh...eehhhhh.eeeeeee...........eeeeeee......eeeeeeeeeeeeeehhhhhh...........hhhhhhhhhhhh........eeehhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) ------------------------------P---------P-----I-I-------------------------------------------------------------------------------------------------A---------------------------------------R------T------------S----T-I-AP-----------S------------T-R--N--R------L-------------------------A------------------------------E---A--------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V----------------------------------------------------------------------F--------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ide C   6 ATATYLKSIMLPETGPASIPDDITERHILKQETSSYNLEVSESGSGVLVCFPGAPGSRIGAHYRWNANQTGLEFDQWLETSQDLKKAFNYGRLISRKYDIQSST--------NGTLNAATFEGSLSEVESLTYNSLMSLTTNPQDKVNNQLVTKGVTVLNLPTGFDKPYVRLEDETPQGLQSMNGAKMRCTAAIAPRRYEIDLPSQRLPPVPATGTLTTLYEGNADIVNSTTVTGDINFSLAEQPADETKFDFQLDFMGLDNDVPVVTVVSSVLATNDNYRGVSAKMTQSIPTENITKPITRVKLSYKINQQTAIGNVATLGTMGPASVSFSSGNGNVPGVLRPITLVAYEKMTPLSILTVAGVSNYELIPNPELLKNMVTRYGKYDPEGLNYAKMILSHREELDIRTVWRTEEYKERTRVFN 428
                                    15        25        35        45        55        65        75        85        95       105   |     -  |    125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425   
                                                                                                                                 109      118                                                                                                                                                                                                                                                                                                                      


Chain D from PDB  Type:PROTEIN  Length:416
 aligned with POLS_IPNVS | Q703G9 from UniProtKB/Swiss-Prot  Length:972

    Alignment length:423
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425   
           POLS_IPNVS     6 ATATYLKSIMLPETGPASIPDDITERHILKQETSSYNLEVSESGSGVLVCFPGAPGSRIGAHYRWNANQTGLEFDQWLETSQDLKKAFNYGRLISRKYDIQSSTLPAGLYALNGTLNAATFEGSLSEVESLTYNSLMSLTTNPQDKVNNQLVTKGVTVLNLPTGFDKPYVRLEDETPQGLQSMNGAKMRCTAAIAPRRYEIDLPSQRLPPVPATGTLTTLYEGNADIVNSTTVTGDINFSLAEQPADETKFDFQLDFMGLDNDVPVVTVVSSVLATNDNYRGVSAKMTQSIPTENITKPITRVKLSYKINQQTAIGNVATLGTMGPASVSFSSGNGNVPGVLRPITLVAYEKMTPLSILTVAGVSNYELIPNPELLKNMVTRYGKYDPEGLNYAKMILSHREELDIRTVWRTEEYKERTRVFN 428
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh............eeeeeeeeeeee......eeeee.......eeeeeeee......eeeeeeee...hhhh.eeeeeeeeeeeeeee...-------..eeeeeee..hhhhh.....hhhhhh..hhh.eeeeee....eeee..........ee..ee.............ee......eeeeeee..............eeeeeeeeee...eeeeeeeeeee.......eeeeeeeeee........eeeeeeeee.......eeeee..eehhhhh...eeeeeeeee..hhhhh...eehhhhh.eeeeeee...........eeeeeee......eeeeeeeeeeeeeehhhhhh...........hhhhhhhhhhhh........eeehhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) ------------------------------P---------P-----I-I-------------------------------------------------------------------------------------------------A---------------------------------------R------T------------S----T-I-AP-----------S------------T-R--N--R------L-------------------------A------------------------------E---A--------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V----------------------------------------------------------------------F--------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ide D   6 ATATYLKSIMLPETGPASIPDDITERHILKQETSSYNLEVSESGSGVLVCFPGAPGSRIGAHYRWNANQTGLEFDQWLETSQDLKKAFNYGRLISRKYDIQSSTL-------NGTLNAATFEGSLSEVESLTYNSLMSLTTNPQDKVNNQLVTKGVTVLNLPTGFDKPYVRLEDETPQGLQSMNGAKMRCTAAIAPRRYEIDLPSQRLPPVPATGTLTTLYEGNADIVNSTTVTGDINFSLAEQPADETKFDFQLDFMGLDNDVPVVTVVSSVLATNDNYRGVSAKMTQSIPTENITKPITRVKLSYKINQQTAIGNVATLGTMGPASVSFSSGNGNVPGVLRPITLVAYEKMTPLSILTVAGVSNYELIPNPELLKNMVTRYGKYDPEGLNYAKMILSHREELDIRTVWRTEEYKERTRVFN 428
                                    15        25        35        45        55        65        75        85        95       105    |    -  |    125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425   
                                                                                                                                  110     118                                                                                                                                                                                                                                                                                                                      


Chain E from PDB  Type:PROTEIN  Length:415
 aligned with POLS_IPNVS | Q703G9 from UniProtKB/Swiss-Prot  Length:972

    Alignment length:423
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425   
           POLS_IPNVS     6 ATATYLKSIMLPETGPASIPDDITERHILKQETSSYNLEVSESGSGVLVCFPGAPGSRIGAHYRWNANQTGLEFDQWLETSQDLKKAFNYGRLISRKYDIQSSTLPAGLYALNGTLNAATFEGSLSEVESLTYNSLMSLTTNPQDKVNNQLVTKGVTVLNLPTGFDKPYVRLEDETPQGLQSMNGAKMRCTAAIAPRRYEIDLPSQRLPPVPATGTLTTLYEGNADIVNSTTVTGDINFSLAEQPADETKFDFQLDFMGLDNDVPVVTVVSSVLATNDNYRGVSAKMTQSIPTENITKPITRVKLSYKINQQTAIGNVATLGTMGPASVSFSSGNGNVPGVLRPITLVAYEKMTPLSILTVAGVSNYELIPNPELLKNMVTRYGKYDPEGLNYAKMILSHREELDIRTVWRTEEYKERTRVFN 428
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh............eeeeeeeeeeee......eeeee.......eeeeeeee......eeeeeeee...hhhh.eeeeeeeeeeeeeee..--------..eeeeeee..hhhhh.....hhhhhh..hhh.eeeeee....eeee..........ee..ee.............ee......eeeeeee..............eeeeeeeeee...eeeeeeeeeee.......eeeeeeeeee........eeeeeeeee.......eeeee..eehhhhh...eeeeeeeee..hhhhh...eehhhhh.eeeeeee...........eeeeeee......eeeeeeeeeeeeeehhhhhh...........hhhhhhhhhhhh........eeehhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) ------------------------------P---------P-----I-I-------------------------------------------------------------------------------------------------A---------------------------------------R------T------------S----T-I-AP-----------S------------T-R--N--R------L-------------------------A------------------------------E---A--------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V----------------------------------------------------------------------F--------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ide E   6 ATATYLKSIMLPETGPASIPDDITERHILKQETSSYNLEVSESGSGVLVCFPGAPGSRIGAHYRWNANQTGLEFDQWLETSQDLKKAFNYGRLISRKYDIQSST--------NGTLNAATFEGSLSEVESLTYNSLMSLTTNPQDKVNNQLVTKGVTVLNLPTGFDKPYVRLEDETPQGLQSMNGAKMRCTAAIAPRRYEIDLPSQRLPPVPATGTLTTLYEGNADIVNSTTVTGDINFSLAEQPADETKFDFQLDFMGLDNDVPVVTVVSSVLATNDNYRGVSAKMTQSIPTENITKPITRVKLSYKINQQTAIGNVATLGTMGPASVSFSSGNGNVPGVLRPITLVAYEKMTPLSILTVAGVSNYELIPNPELLKNMVTRYGKYDPEGLNYAKMILSHREELDIRTVWRTEEYKERTRVFN 428
                                    15        25        35        45        55        65        75        85        95       105   |     -  |    125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425   
                                                                                                                                 109      118
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(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E   (POLS_IPNVS | Q703G9)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0030430    host cell cytoplasm    The cytoplasm of a host cell.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POLS_IPNVS | Q703G9: 2pnl 2pnm

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