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Asym. Unit
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Asym.Unit (698 KB)
Biol.Unit 1, α-C (8.0 MB)
Biol.Unit 1 (8.0 MB)
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(1)
Title
:
STRUCTURE OF IPNV SUBVIRAL PARTICLE
Authors
:
F. Coulibaly, C. Chevalier, B. Delmas, F. A. Rey
Date
:
21 Jul 09 (Deposition) - 29 Dec 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.35
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (12x)
Keywords
:
Jelly Roll, Beta Sandwich, Icosahedral Particle, Virion, Virus Like Particle
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Coulibaly, C. Chevalier, B. Delmas, F. A. Rey
Crystal Structure Of An Aquabirnavirus Particle: Insights Into Antigenic Diversity And Virulence Determinism
J. Virol. V. 84 1792 2010
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close entry info
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: COBALT (II) ION (COa)
2b: COBALT (II) ION (COb)
2c: COBALT (II) ION (COc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
3
Ligand/Ion
CHLORIDE ION
2
CO
3
Ligand/Ion
COBALT (II) ION
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:27 , ASP B:27 , ASP D:27
BINDING SITE FOR RESIDUE CO A 443
2
AC2
SOFTWARE
ALA A:200 , ALA B:200 , ALA D:200
BINDING SITE FOR RESIDUE CL A 444
3
AC3
SOFTWARE
ASP C:27
BINDING SITE FOR RESIDUE CO C 443
4
AC4
SOFTWARE
ALA C:200
BINDING SITE FOR RESIDUE CL C 444
5
AC5
SOFTWARE
ASP E:27
BINDING SITE FOR RESIDUE CO E 443
6
AC6
SOFTWARE
ALA E:200
BINDING SITE FOR RESIDUE CL E 444
[
close Site info
]
SAPs(SNPs)/Variants
(23, 115)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_POLS_IPNVS_001 (Q36P, chain A/B/C/D/E, )
02: VAR_POLS_IPNVS_002 (S46P, chain A/B/C/D/E, )
03: VAR_POLS_IPNVS_003 (V52I, chain A/B/C/D/E, )
04: VAR_POLS_IPNVS_004 (V54I, chain A/B/C/D/E, )
05: VAR_POLS_IPNVS_005 (V152A, chain A/B/C/D/E, )
06: VAR_POLS_IPNVS_006 (K192R, chain A/B/C/D/E, )
07: VAR_POLS_IPNVS_007 (I199T, chain A/B/C/D/E, )
08: VAR_POLS_IPNVS_008 (R212S, chain A/B/C/D/E, )
09: VAR_POLS_IPNVS_009 (P217T, chain A/B/C/D/E, )
10: VAR_POLS_IPNVS_010 (T219I, chain A/B/C/D/E, )
11: VAR_POLS_IPNVS_011 (T221A, chain A/B/C/D/E, )
12: VAR_POLS_IPNVS_012 (L222P, chain A/B/C/D/E, )
13: VAR_POLS_IPNVS_013 (N234S, chain A/B/C/D/E, )
14: VAR_POLS_IPNVS_014 (A247T, chain A/B/C/D/E, )
15: VAR_POLS_IPNVS_015 (Q249R, chain A/B/C/D/E, )
16: VAR_POLS_IPNVS_016 (D252N, chain A/B/C/D/E, )
17: VAR_POLS_IPNVS_017 (D252V, chain A/B/C/D/E, )
18: VAR_POLS_IPNVS_018 (K255R, chain A/B/C/D/E, )
19: VAR_POLS_IPNVS_019 (F262L, chain A/B/C/D/E, )
20: VAR_POLS_IPNVS_020 (V288A, chain A/B/C/D/E, )
21: VAR_POLS_IPNVS_021 (A319E, chain A/B/C/D/E, )
22: VAR_POLS_IPNVS_022 (V323A, chain A/B/C/D/E, )
23: VAR_POLS_IPNVS_023 (V323F, chain A/B/C/D/E, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_POLS_IPNVS_001
*
Q
36
P
POLS_IPNVS
---
---
A/B/C/D/E
Q
36
P
02
UniProt
VAR_POLS_IPNVS_002
*
S
46
P
POLS_IPNVS
---
---
A/B/C/D/E
S
46
P
03
UniProt
VAR_POLS_IPNVS_003
*
V
52
I
POLS_IPNVS
---
---
A/B/C/D/E
V
52
I
04
UniProt
VAR_POLS_IPNVS_004
*
V
54
I
POLS_IPNVS
---
---
A/B/C/D/E
V
54
I
05
UniProt
VAR_POLS_IPNVS_005
*
V
152
A
POLS_IPNVS
---
---
A/B/C/D/E
V
152
A
06
UniProt
VAR_POLS_IPNVS_006
*
K
192
R
POLS_IPNVS
---
---
A/B/C/D/E
K
192
R
07
UniProt
VAR_POLS_IPNVS_007
*
I
199
T
POLS_IPNVS
---
---
A/B/C/D/E
I
199
T
08
UniProt
VAR_POLS_IPNVS_008
*
R
212
S
POLS_IPNVS
---
---
A/B/C/D/E
R
212
S
09
UniProt
VAR_POLS_IPNVS_009
*
P
217
T
POLS_IPNVS
---
---
A/B/C/D/E
P
217
T
10
UniProt
VAR_POLS_IPNVS_010
*
T
219
I
POLS_IPNVS
---
---
A/B/C/D/E
T
219
I
11
UniProt
VAR_POLS_IPNVS_011
*
T
221
A
POLS_IPNVS
---
---
A/B/C/D/E
T
221
A
12
UniProt
VAR_POLS_IPNVS_012
*
L
222
P
POLS_IPNVS
---
---
A/B/C/D/E
L
222
P
13
UniProt
VAR_POLS_IPNVS_013
*
N
234
S
POLS_IPNVS
---
---
A/B/C/D/E
N
234
S
14
UniProt
VAR_POLS_IPNVS_014
*
A
247
T
POLS_IPNVS
---
---
A/B/C/D/E
A
247
T
15
UniProt
VAR_POLS_IPNVS_015
*
Q
249
R
POLS_IPNVS
---
---
A/B/C/D/E
Q
249
R
16
UniProt
VAR_POLS_IPNVS_016
*
D
252
N
POLS_IPNVS
---
---
A/B/C/D/E
D
252
N
17
UniProt
VAR_POLS_IPNVS_017
*
D
252
V
POLS_IPNVS
---
---
A/B/C/D/E
D
252
V
18
UniProt
VAR_POLS_IPNVS_018
*
K
255
R
POLS_IPNVS
---
---
A/B/C/D/E
K
255
R
19
UniProt
VAR_POLS_IPNVS_019
*
F
262
L
POLS_IPNVS
---
---
A/B/C/D/E
F
262
L
20
UniProt
VAR_POLS_IPNVS_020
*
V
288
A
POLS_IPNVS
---
---
A/B/C/D/E
V
288
A
21
UniProt
VAR_POLS_IPNVS_021
*
A
319
E
POLS_IPNVS
---
---
A/B/C/D/E
A
319
E
22
UniProt
VAR_POLS_IPNVS_022
*
V
323
A
POLS_IPNVS
---
---
A/B/C/D/E
V
323
A
23
UniProt
VAR_POLS_IPNVS_023
*
V
323
F
POLS_IPNVS
---
---
A/B/C/D/E
V
323
F
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
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CATH Domains
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Pfam Domains
(0, 0)
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