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(-) Description

Title :  CRYSTAL STRUCTURE OF VP4 PROTEASE FROM INFECTIOUS PANCREATIC NECROSIS VIRUS (IPNV) IN SPACE GROUP P1
 
Authors :  M. Paetzel, J. Lee, A. R. Feldman, B. Delmas
Date :  24 Apr 07  (Deposition) - 05 Jun 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.21
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Biol. Unit 9:  I  (1x)
Biol. Unit 10:  J  (1x)
Keywords :  Acyl-Enzyme, Protease, Ser/Lys Dyad, Viral Protease, Substrate Complex, Product Complex, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Lee, A. R. Feldman, B. Delmas, M. Paetzel
Crystal Structure Of The Vp4 Protease From Infectious Pancreatic Necrosis Virus Reveals The Acyl-Enzyme Complex For An Intermolecular Self-Cleavage Reaction.
J. Biol. Chem. V. 282 24928 2007
PubMed-ID: 17553791  |  Reference-DOI: 10.1074/JBC.M701551200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEASE VP4
    Chains: A, B, C, D, E, F, G, H, I, J
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: VP4TRI (RESIDUES 514-716)
    Mutation: YES
    Organism Scientific: INFECTIOUS PANCREATIC NECROSIS VIRUS
    Organism Taxid: 11002

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (1x): A         
Biological Unit 2 (1x):  B        
Biological Unit 3 (1x):   C       
Biological Unit 4 (1x):    D      
Biological Unit 5 (1x):     E     
Biological Unit 6 (1x):      F    
Biological Unit 7 (1x):       G   
Biological Unit 8 (1x):        H  
Biological Unit 9 (1x):         I 
Biological Unit 10 (1x):          J

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 47)

Asymmetric Unit (2, 47)
No.NameCountTypeFull Name
1GAI17Ligand/IonGUANIDINE
2MSE30Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 5)
No.NameCountTypeFull Name
1GAI2Ligand/IonGUANIDINE
2MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1GAI3Ligand/IonGUANIDINE
2MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (2, 6)
No.NameCountTypeFull Name
1GAI3Ligand/IonGUANIDINE
2MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (2, 4)
No.NameCountTypeFull Name
1GAI1Ligand/IonGUANIDINE
2MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 5 (2, 5)
No.NameCountTypeFull Name
1GAI2Ligand/IonGUANIDINE
2MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 6 (2, 4)
No.NameCountTypeFull Name
1GAI1Ligand/IonGUANIDINE
2MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 7 (1, 3)
No.NameCountTypeFull Name
1GAI-1Ligand/IonGUANIDINE
2MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 8 (2, 6)
No.NameCountTypeFull Name
1GAI3Ligand/IonGUANIDINE
2MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 9 (2, 4)
No.NameCountTypeFull Name
1GAI1Ligand/IonGUANIDINE
2MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 10 (2, 4)
No.NameCountTypeFull Name
1GAI1Ligand/IonGUANIDINE
2MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:524 , ASN A:528 , HIS A:547 , HOH A:2006 , HOH A:2037 , HOH A:2039 , HOH E:2033BINDING SITE FOR RESIDUE GAI A 2002
02AC2SOFTWAREASP A:644 , THR A:699 , SER A:700 , ALA A:703BINDING SITE FOR RESIDUE GAI A 2005
03AC3SOFTWAREPRO B:536 , ASN B:616 , ASN B:618 , HIS H:581 , HOH H:2155BINDING SITE FOR RESIDUE GAI B 2003
04AC4SOFTWARESER B:559 , LEU B:610 , GLU B:622 , HOH B:2015 , HOH B:2040BINDING SITE FOR RESIDUE GAI B 2004
05AC5SOFTWARELEU B:524 , ASN B:528 , HIS B:547 , PHE B:625 , HOH B:2032 , HOH B:2036 , HOH B:2040 , HOH B:2062BINDING SITE FOR RESIDUE GAI B 2009
06AC6SOFTWARESER C:559 , LEU C:610 , GLU C:622 , HOH C:2045 , HOH C:2099BINDING SITE FOR RESIDUE GAI C 2001
07AC7SOFTWARELEU C:524 , ASN C:528 , HIS C:547 , HOH C:2019 , HOH C:2099BINDING SITE FOR RESIDUE GAI C 2006
08AC8SOFTWAREHIS C:581 , PRO H:536 , ASN H:616 , ASN H:618 , HOH H:2075BINDING SITE FOR RESIDUE GAI C 2014
09AC9SOFTWAREHOH C:2124 , LEU D:524 , ASN D:528 , HIS D:547 , ILE D:624 , HOH D:2016 , HOH D:2035 , HOH D:2051BINDING SITE FOR RESIDUE GAI D 2010
10BC1SOFTWARELEU E:524 , ASN E:528 , HIS E:547 , PHE E:557 , HOH E:2016 , HOH E:2018 , HOH E:2044 , HOH E:2104BINDING SITE FOR RESIDUE GAI E 2007
11BC2SOFTWAREHIS E:581 , PRO J:536 , ASN J:616 , ASN J:618 , HOH J:2026BINDING SITE FOR RESIDUE GAI E 2015
12BC3SOFTWARELEU F:524 , ASN F:528 , HIS F:547 , PHE F:557 , PHE F:625 , HOH F:2062BINDING SITE FOR RESIDUE GAI F 2011
13BC4SOFTWARELEU H:524 , ASN H:528 , HIS H:547 , PHE H:557 , HOH H:2048 , HOH H:2049 , HOH H:2068 , HOH H:2154BINDING SITE FOR RESIDUE GAI H 2008
14BC5SOFTWAREPRO H:597 , PHE H:598 , ALA H:659 , ASP H:660 , HOH H:2134BINDING SITE FOR RESIDUE GAI H 2016
15BC6SOFTWAREARG H:715 , ALA H:716 , VAL I:546 , CYS I:669BINDING SITE FOR RESIDUE GAI H 2017
16BC7SOFTWARELEU I:524 , ASN I:528 , HIS I:547 , PHE I:557 , PHE I:625 , HOH I:2022 , HOH I:2027 , HOH I:2028 , HOH I:2080BINDING SITE FOR RESIDUE GAI I 2012
17BC8SOFTWARELEU J:524 , ASN J:528 , HIS J:547 , HOH J:2060 , HOH J:2064BINDING SITE FOR RESIDUE GAI J 2013

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2PNL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2PNL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (2, 20)

Asymmetric Unit (2, 20)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_POLS_IPNVS_027 *P565RPOLS_IPNVS  ---  ---A/B/C/D/E/F/G/H/I/JP565R
2UniProtVAR_POLS_IPNVS_028 *D672APOLS_IPNVS  ---  ---A/B/C/D/E/F/G/H/I/JD672A
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_POLS_IPNVS_027 *P565RPOLS_IPNVS  ---  ---AP565R
2UniProtVAR_POLS_IPNVS_028 *D672APOLS_IPNVS  ---  ---AD672A
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_POLS_IPNVS_027 *P565RPOLS_IPNVS  ---  ---BP565R
2UniProtVAR_POLS_IPNVS_028 *D672APOLS_IPNVS  ---  ---BD672A
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_POLS_IPNVS_027 *P565RPOLS_IPNVS  ---  ---CP565R
2UniProtVAR_POLS_IPNVS_028 *D672APOLS_IPNVS  ---  ---CD672A
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 4 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_POLS_IPNVS_027 *P565RPOLS_IPNVS  ---  ---DP565R
2UniProtVAR_POLS_IPNVS_028 *D672APOLS_IPNVS  ---  ---DD672A
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 5 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_POLS_IPNVS_027 *P565RPOLS_IPNVS  ---  ---EP565R
2UniProtVAR_POLS_IPNVS_028 *D672APOLS_IPNVS  ---  ---ED672A
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 6 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_POLS_IPNVS_027 *P565RPOLS_IPNVS  ---  ---FP565R
2UniProtVAR_POLS_IPNVS_028 *D672APOLS_IPNVS  ---  ---FD672A
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 7 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_POLS_IPNVS_027 *P565RPOLS_IPNVS  ---  ---GP565R
2UniProtVAR_POLS_IPNVS_028 *D672APOLS_IPNVS  ---  ---GD672A
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 8 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_POLS_IPNVS_027 *P565RPOLS_IPNVS  ---  ---HP565R
2UniProtVAR_POLS_IPNVS_028 *D672APOLS_IPNVS  ---  ---HD672A
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 9 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_POLS_IPNVS_027 *P565RPOLS_IPNVS  ---  ---IP565R
2UniProtVAR_POLS_IPNVS_028 *D672APOLS_IPNVS  ---  ---ID672A
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 10 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_POLS_IPNVS_027 *P565RPOLS_IPNVS  ---  ---JP565R
2UniProtVAR_POLS_IPNVS_028 *D672APOLS_IPNVS  ---  ---JD672A
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2PNL)

(-) Exons   (0, 0)

(no "Exon" information available for 2PNL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:203
 aligned with A1XQQ8_9VIRU | A1XQQ8 from UniProtKB/TrEMBL  Length:972

    Alignment length:203
                                   523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713   
         A1XQQ8_9VIRU   514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNMCYTALPLKEIKRNGNIVVEKIFAGPIMGPSAQLGLSLLVNDIEDGVPRMVFTGEIADDEETIIPICGVDIKAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhh..eeeeee......eeeeeee.......eeeeeeeeeee..hhhhhhhhhh.eee.....eeee............eeeeeeeeeee.....eeeee..........hhhhhhhhhhh........ee..ee......ee...hhhhhhhhhhhh...eee......ee..hhhhhhhhhhhh...eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------R----------------------------------------------------------------------------------------------------------A-------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pnl A 514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNmCYTALPLKEIKRNGNIVVEKIFAGPImGPSAQLGLSLLVNDIEDGVPRmVFTGEIADDEETIIPICGVDIAAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
                                   523       533       543       553       563       573       583       593       603       613       623      |633       643       653       663       673       683       693       703       713   
                                                                                                                   603-MSE                    630-MSE               652-MSE                                                            


Chain A from PDB  Type:PROTEIN  Length:203
 aligned with POLS_IPNVS | Q703G9 from UniProtKB/Swiss-Prot  Length:972

    Alignment length:203
                                   523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713   
           POLS_IPNVS   514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNMCYTALPLKEIKRNGNIVVEKIFAGPIMGPSAQLGLSLLVNDIEDGVPRMVFTGEIADDEETIIPICGVDIKAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhh..eeeeee......eeeeeee.......eeeeeeeeeee..hhhhhhhhhh.eee.....eeee............eeeeeeeeeee.....eeeee..........hhhhhhhhhhh........ee..ee......ee...hhhhhhhhhhhh...eee......ee..hhhhhhhhhhhh...eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------R----------------------------------------------------------------------------------------------------------A-------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pnl A 514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNmCYTALPLKEIKRNGNIVVEKIFAGPImGPSAQLGLSLLVNDIEDGVPRmVFTGEIADDEETIIPICGVDIAAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
                                   523       533       543       553       563       573       583       593       603       613       623      |633       643       653       663       673       683       693       703       713   
                                                                                                                   603-MSE                    630-MSE               652-MSE                                                            


Chain B from PDB  Type:PROTEIN  Length:203
 aligned with A1XQQ8_9VIRU | A1XQQ8 from UniProtKB/TrEMBL  Length:972

    Alignment length:203
                                   523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713   
         A1XQQ8_9VIRU   514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNMCYTALPLKEIKRNGNIVVEKIFAGPIMGPSAQLGLSLLVNDIEDGVPRMVFTGEIADDEETIIPICGVDIKAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhh..eeeeee......eeeeeeee......eeeeeeeeeee..hhhhhhhhhh.eee.....eeee............eeeeeeeeeee.....eeeee.....ee...hhhhhhhhhhh........ee..ee......ee...hhhhhhhhhhh....eee......ee..hhhhhhhhhhhh...eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------R----------------------------------------------------------------------------------------------------------A-------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pnl B 514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNmCYTALPLKEIKRNGNIVVEKIFAGPImGPSAQLGLSLLVNDIEDGVPRmVFTGEIADDEETIIPICGVDIAAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
                                   523       533       543       553       563       573       583       593       603       613       623      |633       643       653       663       673       683       693       703       713   
                                                                                                                   603-MSE                    630-MSE               652-MSE                                                            


Chain B from PDB  Type:PROTEIN  Length:203
 aligned with POLS_IPNVS | Q703G9 from UniProtKB/Swiss-Prot  Length:972

    Alignment length:203
                                   523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713   
           POLS_IPNVS   514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNMCYTALPLKEIKRNGNIVVEKIFAGPIMGPSAQLGLSLLVNDIEDGVPRMVFTGEIADDEETIIPICGVDIKAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhh..eeeeee......eeeeeeee......eeeeeeeeeee..hhhhhhhhhh.eee.....eeee............eeeeeeeeeee.....eeeee.....ee...hhhhhhhhhhh........ee..ee......ee...hhhhhhhhhhh....eee......ee..hhhhhhhhhhhh...eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------R----------------------------------------------------------------------------------------------------------A-------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pnl B 514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNmCYTALPLKEIKRNGNIVVEKIFAGPImGPSAQLGLSLLVNDIEDGVPRmVFTGEIADDEETIIPICGVDIAAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
                                   523       533       543       553       563       573       583       593       603       613       623      |633       643       653       663       673       683       693       703       713   
                                                                                                                   603-MSE                    630-MSE               652-MSE                                                            


Chain C from PDB  Type:PROTEIN  Length:203
 aligned with A1XQQ8_9VIRU | A1XQQ8 from UniProtKB/TrEMBL  Length:972

    Alignment length:203
                                   523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713   
         A1XQQ8_9VIRU   514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNMCYTALPLKEIKRNGNIVVEKIFAGPIMGPSAQLGLSLLVNDIEDGVPRMVFTGEIADDEETIIPICGVDIKAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh..eeeeee......eeeeeeee........eeeeeeeee..hhhhhhhhhh.eee.....eeee............eeeeeeeeeee.....eeeee.....eehhhhhhhhhhhhhh........ee..ee......ee...hhhhhhhhhhhh...eee......ee..hhhhhhhhhhhh...eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------R----------------------------------------------------------------------------------------------------------A-------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pnl C 514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNmCYTALPLKEIKRNGNIVVEKIFAGPImGPSAQLGLSLLVNDIEDGVPRmVFTGEIADDEETIIPICGVDIAAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
                                   523       533       543       553       563       573       583       593       603       613       623      |633       643       653       663       673       683       693       703       713   
                                                                                                                   603-MSE                    630-MSE               652-MSE                                                            


Chain C from PDB  Type:PROTEIN  Length:203
 aligned with POLS_IPNVS | Q703G9 from UniProtKB/Swiss-Prot  Length:972

    Alignment length:203
                                   523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713   
           POLS_IPNVS   514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNMCYTALPLKEIKRNGNIVVEKIFAGPIMGPSAQLGLSLLVNDIEDGVPRMVFTGEIADDEETIIPICGVDIKAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh..eeeeee......eeeeeeee........eeeeeeeee..hhhhhhhhhh.eee.....eeee............eeeeeeeeeee.....eeeee.....eehhhhhhhhhhhhhh........ee..ee......ee...hhhhhhhhhhhh...eee......ee..hhhhhhhhhhhh...eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------R----------------------------------------------------------------------------------------------------------A-------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pnl C 514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNmCYTALPLKEIKRNGNIVVEKIFAGPImGPSAQLGLSLLVNDIEDGVPRmVFTGEIADDEETIIPICGVDIAAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
                                   523       533       543       553       563       573       583       593       603       613       623      |633       643       653       663       673       683       693       703       713   
                                                                                                                   603-MSE                    630-MSE               652-MSE                                                            


Chain D from PDB  Type:PROTEIN  Length:203
 aligned with A1XQQ8_9VIRU | A1XQQ8 from UniProtKB/TrEMBL  Length:972

    Alignment length:203
                                   523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713   
         A1XQQ8_9VIRU   514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNMCYTALPLKEIKRNGNIVVEKIFAGPIMGPSAQLGLSLLVNDIEDGVPRMVFTGEIADDEETIIPICGVDIKAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh..eeeeee......eeeeeeee........eeeeeeeee..hhhhhhhhhh.eee.....eeee............eeeeeeeeeee.....eeeee.....ee...hhhhhhhhhhh........ee..ee......ee...hhhhhhhhhhhh...eee......ee..hhhhhhhhhhhh...eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------R----------------------------------------------------------------------------------------------------------A-------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pnl D 514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNmCYTALPLKEIKRNGNIVVEKIFAGPImGPSAQLGLSLLVNDIEDGVPRmVFTGEIADDEETIIPICGVDIAAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
                                   523       533       543       553       563       573       583       593       603       613       623      |633       643       653       663       673       683       693       703       713   
                                                                                                                   603-MSE                    630-MSE               652-MSE                                                            


Chain D from PDB  Type:PROTEIN  Length:203
 aligned with POLS_IPNVS | Q703G9 from UniProtKB/Swiss-Prot  Length:972

    Alignment length:203
                                   523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713   
           POLS_IPNVS   514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNMCYTALPLKEIKRNGNIVVEKIFAGPIMGPSAQLGLSLLVNDIEDGVPRMVFTGEIADDEETIIPICGVDIKAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh..eeeeee......eeeeeeee........eeeeeeeee..hhhhhhhhhh.eee.....eeee............eeeeeeeeeee.....eeeee.....ee...hhhhhhhhhhh........ee..ee......ee...hhhhhhhhhhhh...eee......ee..hhhhhhhhhhhh...eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------R----------------------------------------------------------------------------------------------------------A-------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pnl D 514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNmCYTALPLKEIKRNGNIVVEKIFAGPImGPSAQLGLSLLVNDIEDGVPRmVFTGEIADDEETIIPICGVDIAAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
                                   523       533       543       553       563       573       583       593       603       613       623      |633       643       653       663       673       683       693       703       713   
                                                                                                                   603-MSE                    630-MSE               652-MSE                                                            


Chain E from PDB  Type:PROTEIN  Length:203
 aligned with A1XQQ8_9VIRU | A1XQQ8 from UniProtKB/TrEMBL  Length:972

    Alignment length:203
                                   523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713   
         A1XQQ8_9VIRU   514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNMCYTALPLKEIKRNGNIVVEKIFAGPIMGPSAQLGLSLLVNDIEDGVPRMVFTGEIADDEETIIPICGVDIKAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh..eeeeee......eeeeeeee........eeeeeeeee..hhhhhhhhhh.eee......eee.............eeeeeeeeee.....eeeee.....ee...hhhhhhhhhhh........ee..ee......ee...hhhhhhhhhhh....eee......ee..hhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------R----------------------------------------------------------------------------------------------------------A-------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pnl E 514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNmCYTALPLKEIKRNGNIVVEKIFAGPImGPSAQLGLSLLVNDIEDGVPRmVFTGEIADDEETIIPICGVDIAAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
                                   523       533       543       553       563       573       583       593       603       613       623      |633       643       653       663       673       683       693       703       713   
                                                                                                                   603-MSE                    630-MSE               652-MSE                                                            


Chain E from PDB  Type:PROTEIN  Length:203
 aligned with POLS_IPNVS | Q703G9 from UniProtKB/Swiss-Prot  Length:972

    Alignment length:203
                                   523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713   
           POLS_IPNVS   514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNMCYTALPLKEIKRNGNIVVEKIFAGPIMGPSAQLGLSLLVNDIEDGVPRMVFTGEIADDEETIIPICGVDIKAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh..eeeeee......eeeeeeee........eeeeeeeee..hhhhhhhhhh.eee......eee.............eeeeeeeeee.....eeeee.....ee...hhhhhhhhhhh........ee..ee......ee...hhhhhhhhhhh....eee......ee..hhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------R----------------------------------------------------------------------------------------------------------A-------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pnl E 514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNmCYTALPLKEIKRNGNIVVEKIFAGPImGPSAQLGLSLLVNDIEDGVPRmVFTGEIADDEETIIPICGVDIAAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
                                   523       533       543       553       563       573       583       593       603       613       623      |633       643       653       663       673       683       693       703       713   
                                                                                                                   603-MSE                    630-MSE               652-MSE                                                            


Chain F from PDB  Type:PROTEIN  Length:203
 aligned with A1XQQ8_9VIRU | A1XQQ8 from UniProtKB/TrEMBL  Length:972

    Alignment length:203
                                   523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713   
         A1XQQ8_9VIRU   514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNMCYTALPLKEIKRNGNIVVEKIFAGPIMGPSAQLGLSLLVNDIEDGVPRMVFTGEIADDEETIIPICGVDIKAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhh..eeeeee......eeeeeee.......eeeeeeeeeee..hhhhh......eee.....eeee............eeeeeeeeeee.....eeeee..........hhhhhhhhhhh........ee..ee......ee...hhhhhhhhhhh....eee......ee..hhhhhhhhhhhh...eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------R----------------------------------------------------------------------------------------------------------A-------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pnl F 514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNmCYTALPLKEIKRNGNIVVEKIFAGPImGPSAQLGLSLLVNDIEDGVPRmVFTGEIADDEETIIPICGVDIAAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
                                   523       533       543       553       563       573       583       593       603       613       623      |633       643       653       663       673       683       693       703       713   
                                                                                                                   603-MSE                    630-MSE               652-MSE                                                            


Chain F from PDB  Type:PROTEIN  Length:203
 aligned with POLS_IPNVS | Q703G9 from UniProtKB/Swiss-Prot  Length:972

    Alignment length:203
                                   523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713   
           POLS_IPNVS   514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNMCYTALPLKEIKRNGNIVVEKIFAGPIMGPSAQLGLSLLVNDIEDGVPRMVFTGEIADDEETIIPICGVDIKAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhh..eeeeee......eeeeeee.......eeeeeeeeeee..hhhhh......eee.....eeee............eeeeeeeeeee.....eeeee..........hhhhhhhhhhh........ee..ee......ee...hhhhhhhhhhh....eee......ee..hhhhhhhhhhhh...eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------R----------------------------------------------------------------------------------------------------------A-------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pnl F 514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNmCYTALPLKEIKRNGNIVVEKIFAGPImGPSAQLGLSLLVNDIEDGVPRmVFTGEIADDEETIIPICGVDIAAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
                                   523       533       543       553       563       573       583       593       603       613       623      |633       643       653       663       673       683       693       703       713   
                                                                                                                   603-MSE                    630-MSE               652-MSE                                                            


Chain G from PDB  Type:PROTEIN  Length:203
 aligned with A1XQQ8_9VIRU | A1XQQ8 from UniProtKB/TrEMBL  Length:972

    Alignment length:203
                                   523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713   
         A1XQQ8_9VIRU   514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNMCYTALPLKEIKRNGNIVVEKIFAGPIMGPSAQLGLSLLVNDIEDGVPRMVFTGEIADDEETIIPICGVDIKAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh..eeeeee......eeeeeeee........eeeeeeeee..hhhhhhhhhh.eee.....eeee............eeeeeeeeeee.....eeeee..........hhhhhhhhh..........ee..ee......ee...hhhhhhhhhhh....eee......ee..hhhhhhhhhhhh...eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------R----------------------------------------------------------------------------------------------------------A-------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pnl G 514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNmCYTALPLKEIKRNGNIVVEKIFAGPImGPSAQLGLSLLVNDIEDGVPRmVFTGEIADDEETIIPICGVDIAAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
                                   523       533       543       553       563       573       583       593       603       613       623      |633       643       653       663       673       683       693       703       713   
                                                                                                                   603-MSE                    630-MSE               652-MSE                                                            


Chain G from PDB  Type:PROTEIN  Length:203
 aligned with POLS_IPNVS | Q703G9 from UniProtKB/Swiss-Prot  Length:972

    Alignment length:203
                                   523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713   
           POLS_IPNVS   514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNMCYTALPLKEIKRNGNIVVEKIFAGPIMGPSAQLGLSLLVNDIEDGVPRMVFTGEIADDEETIIPICGVDIKAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh..eeeeee......eeeeeeee........eeeeeeeee..hhhhhhhhhh.eee.....eeee............eeeeeeeeeee.....eeeee..........hhhhhhhhh..........ee..ee......ee...hhhhhhhhhhh....eee......ee..hhhhhhhhhhhh...eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------R----------------------------------------------------------------------------------------------------------A-------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pnl G 514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNmCYTALPLKEIKRNGNIVVEKIFAGPImGPSAQLGLSLLVNDIEDGVPRmVFTGEIADDEETIIPICGVDIAAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
                                   523       533       543       553       563       573       583       593       603       613       623      |633       643       653       663       673       683       693       703       713   
                                                                                                                   603-MSE                    630-MSE               652-MSE                                                            


Chain H from PDB  Type:PROTEIN  Length:203
 aligned with A1XQQ8_9VIRU | A1XQQ8 from UniProtKB/TrEMBL  Length:972

    Alignment length:203
                                   523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713   
         A1XQQ8_9VIRU   514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNMCYTALPLKEIKRNGNIVVEKIFAGPIMGPSAQLGLSLLVNDIEDGVPRMVFTGEIADDEETIIPICGVDIKAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh..eeeeee......eeeeeeee........eeeeeeeee..hhhhhhhhhh.eee......eee.............eeeeeeeeee.....eeeee.....ee...hhhhhhhhhhh........ee..ee......ee...hhhhhhhhhhh....eee......ee..hhhhhhhhhhhh...eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------R----------------------------------------------------------------------------------------------------------A-------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pnl H 514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNmCYTALPLKEIKRNGNIVVEKIFAGPImGPSAQLGLSLLVNDIEDGVPRmVFTGEIADDEETIIPICGVDIAAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
                                   523       533       543       553       563       573       583       593       603       613       623      |633       643       653       663       673       683       693       703       713   
                                                                                                                   603-MSE                    630-MSE               652-MSE                                                            


Chain H from PDB  Type:PROTEIN  Length:203
 aligned with POLS_IPNVS | Q703G9 from UniProtKB/Swiss-Prot  Length:972

    Alignment length:203
                                   523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713   
           POLS_IPNVS   514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNMCYTALPLKEIKRNGNIVVEKIFAGPIMGPSAQLGLSLLVNDIEDGVPRMVFTGEIADDEETIIPICGVDIKAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh..eeeeee......eeeeeeee........eeeeeeeee..hhhhhhhhhh.eee......eee.............eeeeeeeeee.....eeeee.....ee...hhhhhhhhhhh........ee..ee......ee...hhhhhhhhhhh....eee......ee..hhhhhhhhhhhh...eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------R----------------------------------------------------------------------------------------------------------A-------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pnl H 514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNmCYTALPLKEIKRNGNIVVEKIFAGPImGPSAQLGLSLLVNDIEDGVPRmVFTGEIADDEETIIPICGVDIAAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
                                   523       533       543       553       563       573       583       593       603       613       623      |633       643       653       663       673       683       693       703       713   
                                                                                                                   603-MSE                    630-MSE               652-MSE                                                            


Chain I from PDB  Type:PROTEIN  Length:203
 aligned with A1XQQ8_9VIRU | A1XQQ8 from UniProtKB/TrEMBL  Length:972

    Alignment length:203
                                   523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713   
         A1XQQ8_9VIRU   514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNMCYTALPLKEIKRNGNIVVEKIFAGPIMGPSAQLGLSLLVNDIEDGVPRMVFTGEIADDEETIIPICGVDIKAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhh..eeeeee......eeeeeeee......eeeeeeeeeee..hhhhhhhhhh.eee.....eeee............eeeeeeeeeee.....eeeee.....ee...hhhhhhhhhhh........ee..ee......ee...hhhhhhhhhhhh...eee......ee..hhhhhhhhhhhh...eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------R----------------------------------------------------------------------------------------------------------A-------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pnl I 514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNmCYTALPLKEIKRNGNIVVEKIFAGPImGPSAQLGLSLLVNDIEDGVPRmVFTGEIADDEETIIPICGVDIAAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
                                   523       533       543       553       563       573       583       593       603       613       623      |633       643       653       663       673       683       693       703       713   
                                                                                                                   603-MSE                    630-MSE               652-MSE                                                            


Chain I from PDB  Type:PROTEIN  Length:203
 aligned with POLS_IPNVS | Q703G9 from UniProtKB/Swiss-Prot  Length:972

    Alignment length:203
                                   523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713   
           POLS_IPNVS   514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNMCYTALPLKEIKRNGNIVVEKIFAGPIMGPSAQLGLSLLVNDIEDGVPRMVFTGEIADDEETIIPICGVDIKAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhh..eeeeee......eeeeeeee......eeeeeeeeeee..hhhhhhhhhh.eee.....eeee............eeeeeeeeeee.....eeeee.....ee...hhhhhhhhhhh........ee..ee......ee...hhhhhhhhhhhh...eee......ee..hhhhhhhhhhhh...eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------R----------------------------------------------------------------------------------------------------------A-------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pnl I 514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNmCYTALPLKEIKRNGNIVVEKIFAGPImGPSAQLGLSLLVNDIEDGVPRmVFTGEIADDEETIIPICGVDIAAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
                                   523       533       543       553       563       573       583       593       603       613       623      |633       643       653       663       673       683       693       703       713   
                                                                                                                   603-MSE                    630-MSE               652-MSE                                                            


Chain J from PDB  Type:PROTEIN  Length:203
 aligned with A1XQQ8_9VIRU | A1XQQ8 from UniProtKB/TrEMBL  Length:972

    Alignment length:203
                                   523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713   
         A1XQQ8_9VIRU   514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNMCYTALPLKEIKRNGNIVVEKIFAGPIMGPSAQLGLSLLVNDIEDGVPRMVFTGEIADDEETIIPICGVDIKAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Birna_VP4-2pnlJ01 J:514-706                                                                                                                                                                      ---------- Pfam domains (1)
           Pfam domains (2) Birna_VP4-2pnlJ02 J:514-706                                                                                                                                                                      ---------- Pfam domains (2)
           Pfam domains (3) Birna_VP4-2pnlJ03 J:514-706                                                                                                                                                                      ---------- Pfam domains (3)
           Pfam domains (4) Birna_VP4-2pnlJ04 J:514-706                                                                                                                                                                      ---------- Pfam domains (4)
           Pfam domains (5) Birna_VP4-2pnlJ05 J:514-706                                                                                                                                                                      ---------- Pfam domains (5)
           Pfam domains (6) Birna_VP4-2pnlJ06 J:514-706                                                                                                                                                                      ---------- Pfam domains (6)
           Pfam domains (7) Birna_VP4-2pnlJ07 J:514-706                                                                                                                                                                      ---------- Pfam domains (7)
           Pfam domains (8) Birna_VP4-2pnlJ08 J:514-706                                                                                                                                                                      ---------- Pfam domains (8)
           Pfam domains (9) Birna_VP4-2pnlJ09 J:514-706                                                                                                                                                                      ---------- Pfam domains (9)
          Pfam domains (10) Birna_VP4-2pnlJ10 J:514-706                                                                                                                                                                      ---------- Pfam domains (10)
         Sec.struct. author ...hhhhhhhhhh..eeeeee......eeeeeeee........eeeeeeeee..hhhhhhhhhh.eee.....eeee............eeeeeeeeeee.....eeeee.....ee...hhhhhhhhhhh........ee..ee......ee...hhhhhhhhhhhh...eee......ee..hhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------R----------------------------------------------------------------------------------------------------------A-------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pnl J 514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNmCYTALPLKEIKRNGNIVVEKIFAGPImGPSAQLGLSLLVNDIEDGVPRmVFTGEIADDEETIIPICGVDIAAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
                                   523       533       543       553       563       573       583       593       603       613       623      |633       643       653       663       673       683       693       703       713   
                                                                                                                   603-MSE                    630-MSE               652-MSE                                                            


Chain J from PDB  Type:PROTEIN  Length:203
 aligned with POLS_IPNVS | Q703G9 from UniProtKB/Swiss-Prot  Length:972

    Alignment length:203
                                   523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713   
           POLS_IPNVS   514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNMCYTALPLKEIKRNGNIVVEKIFAGPIMGPSAQLGLSLLVNDIEDGVPRMVFTGEIADDEETIIPICGVDIKAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Birna_VP4-2pnlJ01 J:514-706                                                                                                                                                                      ---------- Pfam domains (1)
           Pfam domains (2) Birna_VP4-2pnlJ02 J:514-706                                                                                                                                                                      ---------- Pfam domains (2)
           Pfam domains (3) Birna_VP4-2pnlJ03 J:514-706                                                                                                                                                                      ---------- Pfam domains (3)
           Pfam domains (4) Birna_VP4-2pnlJ04 J:514-706                                                                                                                                                                      ---------- Pfam domains (4)
           Pfam domains (5) Birna_VP4-2pnlJ05 J:514-706                                                                                                                                                                      ---------- Pfam domains (5)
           Pfam domains (6) Birna_VP4-2pnlJ06 J:514-706                                                                                                                                                                      ---------- Pfam domains (6)
           Pfam domains (7) Birna_VP4-2pnlJ07 J:514-706                                                                                                                                                                      ---------- Pfam domains (7)
           Pfam domains (8) Birna_VP4-2pnlJ08 J:514-706                                                                                                                                                                      ---------- Pfam domains (8)
           Pfam domains (9) Birna_VP4-2pnlJ09 J:514-706                                                                                                                                                                      ---------- Pfam domains (9)
          Pfam domains (10) Birna_VP4-2pnlJ10 J:514-706                                                                                                                                                                      ---------- Pfam domains (10)
         Sec.struct. author ...hhhhhhhhhh..eeeeee......eeeeeeee........eeeeeeeee..hhhhhhhhhh.eee.....eeee............eeeeeeeeeee.....eeeee.....ee...hhhhhhhhhhh........ee..ee......ee...hhhhhhhhhhhh...eee......ee..hhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------R----------------------------------------------------------------------------------------------------------A-------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pnl J 514 GKFSRALKNRLESANYEEVELPPPSKGVIVPVVHTVKSAPGEAFGSLAIIIPGEYPELLDANQQVLSHFANDTGSVWGIGEDIPFEGDNmCYTALPLKEIKRNGNIVVEKIFAGPImGPSAQLGLSLLVNDIEDGVPRmVFTGEIADDEETIIPICGVDIAAIAAHEQGLPLIGNQPGVDEEVRNTSLAAHLIQTGTLPVQRA 716
                                   523       533       543       553       563       573       583       593       603       613       623      |633       643       653       663       673       683       693       703       713   
                                                                                                                   603-MSE                    630-MSE               652-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2PNL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2PNL)

(-) Pfam Domains  (1, 10)

Asymmetric Unit
(-)
Clan: no clan defined [family: Birna_VP4] (2)

(-) Gene Ontology  (9, 17)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J   (POLS_IPNVS | Q703G9)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0030430    host cell cytoplasm    The cytoplasm of a host cell.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

Chain A,B,C,D,E,F,G,H,I,J   (A1XQQ8_9VIRU | A1XQQ8)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0030430    host cell cytoplasm    The cytoplasm of a host cell.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POLS_IPNVS | Q703G9: 2pnm 3ide

(-) Related Entries Specified in the PDB File

2gef VP4 PROTEASE FROM ANOTHER BIRNAVIRUS (BLOTCHED SNAKEHEAD VIRUS, BSNV)
2pnm VP4 FROM IPNV IN THE SPACE GROUP P6122