SCOP Search:   
        by sunid, keyword
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(use 'Shift Left-Click' to collapse/expand all levels downwards; use 'Control Left-Click' to collapse/expand all levels upwards)
 
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Fold: Ribonuclease PH domain 2-like (52)
(-)
Superfamily: Ribonuclease PH domain 2-like (52)
(-)
Family: automated matches (11)
(-)
Protein domain: automated matches (11)
(-)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] (1)
2WP8B:153-239YEAST RRP44 NUCLEASE
(-)
Methanothermobacter thermautotrophicus [TaxId: 145262] (1)
2WNRA:188-269; B:154-236; C:188-270; D:154-236; E:188-270; F:154-237THE STRUCTURE OF METHANOTHERMOBACTER THERMAUTOTROPHICUS EXOSOME CORE ASSEMBLY
(-)
Mycobacterium tuberculosis [TaxId: 83332] (1)
3B4TA:152-247; B:152-247; C:152-247; D:152-247; E:152-247; F:152-247CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RNASE PH, THE MYCOBACTERIUM TUBERCULOSIS STRUCTURAL GENOMICS CONSORTIUM TARGET RV1340
(-)
Pyrococcus abyssi [TaxId: 29292] (4)
2PNZA:154-244; B:188-274CRYSTAL STRUCTURE OF THE P. ABYSSI EXOSOME RNASE PH RING COMPLEXED WITH UDP AND GMP
2PO0A:154-244; B:188-274CRYSTAL STRUCTURE OF THE P. ABYSSI EXOSOME RNASE PH RING COMPLEXED WITH ADP IN DOUBLE CONFORMATION
2PO1A:154-244; B:188-274CRYSTAL STRUCTURE OF THE P. ABYSSI EXOSOME RNASE PH RING COMPLEXED WITH A SINGLE STRANDED 10-MER POLY(A) RNA
2PO2A:154-244; B:188-274CRYSTAL STRUCTURE OF THE P. ABYSSI EXOSOME RNASE PH RING COMPLEXED WITH CDP
(-)
Sulfolobus solfataricus [TaxId: 2287] (4)
2BR2A:192-275; C:192-275; U:192-275; W:192-275; E:192-275; G:192-275; I:192-275; K:192-275; M:192-275; O:192-275; Q:192-275; S:192-275RNASE PH CORE OF THE ARCHAEAL EXOSOME
2C37A:192-275; C:192-275; E:192-275; G:192-275; I:192-275; K:192-275; M:192-275; O:192-275; Q:192-275; S:192-275; U:192-275; W:192-275RNASE PH CORE OF THE ARCHAEAL EXOSOME IN COMPLEX WITH U8 RNA
2C38A:192-275; C:192-275; E:192-275; G:192-275; I:192-275; K:192-275; M:192-275; O:192-275; Q:192-275; S:192-275; U:192-274; W:192-275RNASE PH CORE OF THE ARCHAEAL EXOSOME IN COMPLEX WITH A5 RNA
3L7ZA:188-271; D:188-271; G:188-270CRYSTAL STRUCTURE OF THE S. SOLFATARICUS ARCHAEAL EXOSOME
(-)
Family: Ribonuclease PH domain 2-like (41)
(-)
Protein domain: automated matches (2)
(-)
Archaeoglobus fulgidus [TaxId: 2234] (2)
3M7ND:154-250; E:154-253; F:154-253ARCHAEOGLOBUS FULGIDUS EXOSOME WITH RNA BOUND TO THE ACTIVE SITE
3M85D:154-250; E:154-250; F:154-253ARCHAEOGLOBUS FULGIDUS EXOSOME Y70A WITH RNA BOUND TO THE ACTIVE SITE
(-)
Protein domain: Exosome complex exonuclease 1, ECX1 (11)
(-)
Archaeoglobus fulgidus [TaxId: 2234] (2)
2BA0D:154-252; E:154-252; F:154-252ARCHAEAL EXOSOME CORE
2BA1D:154-253; E:154-253; F:154-253ARCHAEAL EXOSOME CORE
(-)
Sulfolobus solfataricus [TaxId: 2287] (9)
2BR2B:156-248; N:156-248; P:156-248; R:156-248; T:156-248; V:156-248; X:156-248; D:156-248; F:156-248; H:156-248; J:156-248; L:156-248RNASE PH CORE OF THE ARCHAEAL EXOSOME
2C37B:156-248; D:156-248; F:156-248; H:156-248; J:156-248; L:156-248; N:156-248; P:156-248; R:156-248; T:156-248; V:156-248; X:156-248RNASE PH CORE OF THE ARCHAEAL EXOSOME IN COMPLEX WITH U8 RNA
2C38B:156-248; D:156-248; F:156-248; H:156-248; J:156-248; L:156-248; N:156-248; P:156-248; R:156-248; T:156-248; V:156-247; X:156-248RNASE PH CORE OF THE ARCHAEAL EXOSOME IN COMPLEX WITH A5 RNA
2C39B:156-248; D:156-248; F:156-248; J:156-248; L:156-248; N:156-248; P:156-248; R:156-248; T:156-248; V:156-247; X:156-248RNASE PH CORE OF THE ARCHAEAL EXOSOME IN COMPLEX WITH ADP
2JE6B:156-241STRUCTURE OF A 9-SUBUNIT ARCHAEAL EXOSOME
2JEAB:156-241STRUCTURE OF A 9-SUBUNIT ARCHAEAL EXOSOME BOUND TO RNA
2JEBB:156-241STRUCTURE OF A 9-SUBUNIT ARCHAEAL EXOSOME BOUND TO MN IONS
4BA1B:156-241ARCHAEAL EXOSOME (RRP4-RRP41(D182A)-RRP42) BOUND TO INORGANIC PHOSPHATE
4BA2B:156-241ARCHAEAL EXOSOME (RRP4-RRP41(D182A)-RRP42) BOUND TO INORGANIC PHOSPHATE
(-)
Protein domain: Exosome complex exonuclease 2, ECX2 (10)
(-)
Archaeoglobus fulgidus [TaxId: 2234] (4)
2BA0G:179-257; H:179-258; I:179-257ARCHAEAL EXOSOME CORE
2BA1G:179-258; H:179-258; I:179-258ARCHAEAL EXOSOME CORE
3M7NG:179-257; H:179-259; I:179-259ARCHAEOGLOBUS FULGIDUS EXOSOME WITH RNA BOUND TO THE ACTIVE SITE
3M85G:179-258; H:179-258; I:179-259ARCHAEOGLOBUS FULGIDUS EXOSOME Y70A WITH RNA BOUND TO THE ACTIVE SITE
(-)
Sulfolobus solfataricus [TaxId: 2287] (6)
2C39A:192-275; K:192-275; M:192-275; O:192-275; Q:192-275; S:192-274; U:192-274; W:192-275; C:192-275; E:192-275; G:192-275; I:192-275RNASE PH CORE OF THE ARCHAEAL EXOSOME IN COMPLEX WITH ADP
2JE6A:192-275STRUCTURE OF A 9-SUBUNIT ARCHAEAL EXOSOME
2JEAA:192-275STRUCTURE OF A 9-SUBUNIT ARCHAEAL EXOSOME BOUND TO RNA
2JEBA:192-275STRUCTURE OF A 9-SUBUNIT ARCHAEAL EXOSOME BOUND TO MN IONS
4BA1A:192-275ARCHAEAL EXOSOME (RRP4-RRP41(D182A)-RRP42) BOUND TO INORGANIC PHOSPHATE
4BA2A:192-275ARCHAEAL EXOSOME (RRP4-RRP41(D182A)-RRP42) BOUND TO INORGANIC PHOSPHATE
(-)
Protein domain: Exosome complex exonuclease MTR3 (1)
(-)
Human (Homo sapiens) [TaxId: 9606] (1)
2NN6F:176-270STRUCTURE OF THE HUMAN RNA EXOSOME COMPOSED OF RRP41, RRP45, RRP46, RRP43, MTR3, RRP42, CSL4, RRP4, AND RRP40
(-)
Protein domain: Exosome complex exonuclease RRP41 (1)
(-)
Human (Homo sapiens) [TaxId: 9606] (1)
2NN6B:151-240STRUCTURE OF THE HUMAN RNA EXOSOME COMPOSED OF RRP41, RRP45, RRP46, RRP43, MTR3, RRP42, CSL4, RRP4, AND RRP40
(-)
Protein domain: Exosome complex exonuclease RRP42 (1)
(-)
Human (Homo sapiens) [TaxId: 9606] (1)
2NN6E:192-285STRUCTURE OF THE HUMAN RNA EXOSOME COMPOSED OF RRP41, RRP45, RRP46, RRP43, MTR3, RRP42, CSL4, RRP4, AND RRP40
(-)
Protein domain: Exosome complex exonuclease RRP43 (1)
(-)
Human (Homo sapiens) [TaxId: 9606] (1)
2NN6C:188-276STRUCTURE OF THE HUMAN RNA EXOSOME COMPOSED OF RRP41, RRP45, RRP46, RRP43, MTR3, RRP42, CSL4, RRP4, AND RRP40
(-)
Protein domain: Exosome complex exonuclease RRP45 (1)
(-)
Human (Homo sapiens) [TaxId: 9606] (1)
2NN6A:185-302STRUCTURE OF THE HUMAN RNA EXOSOME COMPOSED OF RRP41, RRP45, RRP46, RRP43, MTR3, RRP42, CSL4, RRP4, AND RRP40
(-)
Protein domain: Exosome complex exonuclease RRP46 (1)
(-)
Human (Homo sapiens) [TaxId: 9606] (1)
2NN6D:147-235STRUCTURE OF THE HUMAN RNA EXOSOME COMPOSED OF RRP41, RRP45, RRP46, RRP43, MTR3, RRP42, CSL4, RRP4, AND RRP40
(-)
Protein domain: Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 (2)
(-)
Streptomyces antibioticus [TaxId: 1890] (2)
1E3HA:152-262; A:483-578SEMET DERIVATIVE OF STREPTOMYCES ANTIBIOTICUS PNPASE/GPSI ENZYME
1E3PA:152-262; A:483-578TUNGSTATE DERIVATIVE OF STREPTOMYCES ANTIBIOTICUS PNPASE/ GPSI ENZYME
(-)
Protein domain: Ribonuclease PH, domain 2 (10)
(-)
Aquifex aeolicus [TaxId: 63363] (4)
1UDNA:151-255CRYSTAL STRUCTURE OF THE TRNA PROCESSING ENZYME RNASE PH FROM AQUIFEX AEOLICUS
1UDOA:151-255CRYSTAL STRUCTURE OF THE TRNA PROCESSING ENZYME RNASE PH R86A MUTANT FROM AQUIFEX AEOLICUS
1UDQA:151-255CRYSTAL STRUCTURE OF THE TRNA PROCESSING ENZYME RNASE PH T125A MUTANT FROM AQUIFEX AEOLICUS
1UDSA:151-255CRYSTAL STRUCTURE OF THE TRNA PROCESSING ENZYME RNASE PH R126A MUTANT FROM AQUIFEX AEOLICUS
(-)
Bacillus anthracis (1)
3DD6A:152-245CRYSTAL STRUCTURE OF RPH, AN EXORIBONUCLEASE FROM BACILLUS ANTHRACIS AT 1.7 A RESOLUTION
(-)
Bacillus subtilis [TaxId: 1423] (3)
1OYPA:152-243; B:152-243; C:152-243; D:152-243; E:152-243; F:152-243CRYSTAL STRUCTURE OF THE PHOSPHOROLYTIC EXORIBONUCLEASE RNASE PH FROM BACILLUS SUBTILIS
1OYRA:152-242; D:152-242; E:152-242; F:152-242; B:152-242; C:152-242CRYSTAL STRUCTURE OF THE PHOSPHOROLYTIC EXORIBONUCLEASE RNASE PH FROM BACILLUS SUBTILIS
1OYSA:152-237CRYSTAL STRUCTURE OF THE PHOSPHOROLYTIC EXORIBONUCLEASE RNASE PH FROM BACILLUS SUBTILIS
(-)
Pseudomonas aeruginosa [TaxId: 287] (2)
1R6LA:152-239CRYSTAL STRUCTURE OF THE TRNA PROCESSING ENZYME RNASE PH FROM PSEUDOMONAS AERUGINOSA
1R6MA:152-239CRYSTAL STRUCTURE OF THE TRNA PROCESSING ENZYME RNASE PH FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH PHOSPHATE