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(-) Description

Title :  CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RNASE PH, THE MYCOBACTERIUM TUBERCULOSIS STRUCTURAL GENOMICS CONSORTIUM TARGET RV1340
 
Authors :  A. J. Antczak, J. M. Berger, T. Lekin, B. W. Segelke, Mycobacterium Tub Structural Genomics Consortium (Tbsgc), Tb Structural Genomi Consortium (Tbsgc)
Date :  24 Oct 07  (Deposition) - 20 Nov 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Rnase, Trna Nucleotidyltransferase, Ribonuclease, Rpha, Structural Genomics, Tbsgc, Mycobacterium Tuberculosis Structural Genomics Consortium, Trna Processing, Tb Structural Genomics Consortium, Psi, Protein Structure Initiative, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. J. Antczak, T. Lekin, B. W. Segelke, J. M. Berger
2. 1 A Crystal Structure Of Rnase Ph From Mycobacterium Tuberculosis.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RIBONUCLEASE PH
    Atcc: 25618
    Chains: A, B, C, D, E, F
    EC Number: 2.7.7.56
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22B
    Expression System Strain: BL21(DE3)GOLD
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RPH, RPHA, RV1340, MT1381, MTCY130.25, MTCY02B10.04
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 83332
    Strain: H37RV
    Synonym: RNASE PH, TRNA NUCLEOTIDYLTRANSFERASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 10)

Asymmetric/Biological Unit (1, 10)
No.NameCountTypeFull Name
1PO410Ligand/IonPHOSPHATE ION

(-) Sites  (0, 0)

(no "Site" information available for 3B4T)

(-) SS Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1A:102 -A:159
2B:102 -B:159
3C:102 -C:159
4D:102 -D:159
5E:102 -E:159
6F:102 -F:159

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly E:244 -Val E:245

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3B4T)

(-) PROSITE Motifs  (1, 6)

Asymmetric/Biological Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RIBONUCLEASE_PHPS01277 Ribonuclease PH signature.RNPH_MYCTO118-131
 
 
 
 
 		  6A:117-130
B:117-130
C:117-130
D:117-130
E:117-130
F:117-130
RNPH_MYCTU118-131
 
 
 
 
 		  6A:117-130
B:117-130
C:117-130
D:117-130
E:117-130
F:117-130

(-) Exons   (0, 0)

(no "Exon" information available for 3B4T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:243
 aligned with RNPH_MYCTO | P9WGZ6 from UniProtKB/Swiss-Prot  Length:259

    Alignment length:247
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       
           RNPH_MYCTO     2 SKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPGVLP 248
               SCOP domains d3b4ta1 A:1-151 automated matches                                                                                                                      d3b4ta2 A:152-247 automated matches                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeee.......eeeeeee..eeeeeeeeeee...----.....eeeeeeee.hhhh.....hhhhhh..hhhhhhhhhhhhhhhhh..hhhhhh.eeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeeee..eeee..hhhhhh...eeeeeeee....eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------RIBONUCLEASE_P--------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3b4t A   1 SKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVP----ATGLGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPGVLP 247
                                    10        20        30        40        |-   |    60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
                                                                           49   54                                                                                                                                                                                                 


Chain A from PDB  Type:PROTEIN  Length:243
 aligned with RNPH_MYCTU | P9WGZ7 from UniProtKB/Swiss-Prot  Length:259

    Alignment length:247
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       
           RNPH_MYCTU     2 SKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPGVLP 248
               SCOP domains d3b4ta1 A:1-151 automated matches                                                                                                                      d3b4ta2 A:152-247 automated matches                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeee.......eeeeeee..eeeeeeeeeee...----.....eeeeeeee.hhhh.....hhhhhh..hhhhhhhhhhhhhhhhh..hhhhhh.eeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeeee..eeee..hhhhhh...eeeeeeee....eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------RIBONUCLEASE_P--------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3b4t A   1 SKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVP----ATGLGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPGVLP 247
                                    10        20        30        40        |-   |    60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
                                                                           49   54                                                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:239
 aligned with RNPH_MYCTO | P9WGZ6 from UniProtKB/Swiss-Prot  Length:259

    Alignment length:246
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242      
           RNPH_MYCTO     3 KREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPGVLP 248
               SCOP domains d3b4tb1 B:2-151 automated matches                                                                                                                     d3b4tb2 B:152-247 automated matches                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............eeeee.......eeeeeee..eeeeeeeeeee...-------..eeeeeeee..........hhhhhh..hhhhhhhhhhhhhhhhh.........eeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeeee..eeee..hhhhhh...eeeeeeee....eeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------RIBONUCLEASE_P--------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3b4t B   2 KREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVP-------LGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPGVLP 247
                                    11        21        31        41       | -     |  61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241      
                                                                          49      57                                                                                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:239
 aligned with RNPH_MYCTU | P9WGZ7 from UniProtKB/Swiss-Prot  Length:259

    Alignment length:246
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242      
           RNPH_MYCTU     3 KREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPGVLP 248
               SCOP domains d3b4tb1 B:2-151 automated matches                                                                                                                     d3b4tb2 B:152-247 automated matches                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............eeeee.......eeeeeee..eeeeeeeeeee...-------..eeeeeeee..........hhhhhh..hhhhhhhhhhhhhhhhh.........eeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeeee..eeee..hhhhhh...eeeeeeee....eeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------RIBONUCLEASE_P--------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3b4t B   2 KREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVP-------LGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPGVLP 247
                                    11        21        31        41       | -     |  61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241      
                                                                          49      57                                                                                                                                                                                              


Chain C from PDB  Type:PROTEIN  Length:241
 aligned with RNPH_MYCTO | P9WGZ6 from UniProtKB/Swiss-Prot  Length:259

    Alignment length:246
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242      
           RNPH_MYCTO     3 KREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPGVLP 248
               SCOP domains d3b4tc1 C:2-151 automated matches                                                                                                                     d3b4tc2 C:152-247 automated matches                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............eeeee.......eeeeeee..eeeeeeeeeee.....-----..eeeeeeee.hhhh.....hhhhhh..hhhhhhhhhhhhhhhhh.........eeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhh...........eeeeeeeee..eeee..hhhhhhheeeeeeeeee....eeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------RIBONUCLEASE_P--------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3b4t C   2 KREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRW-----LGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPGVLP 247
                                    11        21        31        41        51     |  61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241      
                                                                            51    57                                                                                                                                                                                              


Chain C from PDB  Type:PROTEIN  Length:241
 aligned with RNPH_MYCTU | P9WGZ7 from UniProtKB/Swiss-Prot  Length:259

    Alignment length:246
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242      
           RNPH_MYCTU     3 KREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPGVLP 248
               SCOP domains d3b4tc1 C:2-151 automated matches                                                                                                                     d3b4tc2 C:152-247 automated matches                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............eeeee.......eeeeeee..eeeeeeeeeee.....-----..eeeeeeee.hhhh.....hhhhhh..hhhhhhhhhhhhhhhhh.........eeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhh...........eeeeeeeee..eeee..hhhhhhheeeeeeeeee....eeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------RIBONUCLEASE_P--------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3b4t C   2 KREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRW-----LGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPGVLP 247
                                    11        21        31        41        51     |  61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241      
                                                                            51    57                                                                                                                                                                                              


Chain D from PDB  Type:PROTEIN  Length:239
 aligned with RNPH_MYCTO | P9WGZ6 from UniProtKB/Swiss-Prot  Length:259

    Alignment length:246
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242      
           RNPH_MYCTO     3 KREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPGVLP 248
               SCOP domains d3b4td1 D:2-151 automated matches                                                                                                                     d3b4td2 D:152-247 automated matches                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............eeeee.......eeeeeee..eeeeeeeeee....-------..eeeeeeee.hhhh.....hhhhhh..hhhhhhhhhhhhhhhhh..........eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeeee..eeee..hhhhhh...eeeeeeee....eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------RIBONUCLEASE_P--------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3b4t D   2 KREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVP-------LGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPGVLP 247
                                    11        21        31        41       | -     |  61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241      
                                                                          49      57                                                                                                                                                                                              


Chain D from PDB  Type:PROTEIN  Length:239
 aligned with RNPH_MYCTU | P9WGZ7 from UniProtKB/Swiss-Prot  Length:259

    Alignment length:246
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242      
           RNPH_MYCTU     3 KREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPGVLP 248
               SCOP domains d3b4td1 D:2-151 automated matches                                                                                                                     d3b4td2 D:152-247 automated matches                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............eeeee.......eeeeeee..eeeeeeeeee....-------..eeeeeeee.hhhh.....hhhhhh..hhhhhhhhhhhhhhhhh..........eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeeee..eeee..hhhhhh...eeeeeeee....eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------RIBONUCLEASE_P--------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3b4t D   2 KREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVP-------LGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPGVLP 247
                                    11        21        31        41       | -     |  61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241      
                                                                          49      57                                                                                                                                                                                              


Chain E from PDB  Type:PROTEIN  Length:240
 aligned with RNPH_MYCTO | P9WGZ6 from UniProtKB/Swiss-Prot  Length:259

    Alignment length:247
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       
           RNPH_MYCTO     2 SKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPGVLP 248
               SCOP domains d3b4te1 E:1-151 automated matches                                                                                                                      d3b4te2 E:152-247 automated matches                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeee.......eeeeeee..eeeeeeeeee....-------..eeeeeeee..........hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeeee..eeee..hhhhhhhh.eeeeeeee....eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------RIBONUCLEASE_P--------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3b4t E   1 SKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVP-------LGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPGVLP 247
                                    10        20        30        40        |-      | 60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
                                                                           49      57                                                                                                                                                                                              


Chain E from PDB  Type:PROTEIN  Length:240
 aligned with RNPH_MYCTU | P9WGZ7 from UniProtKB/Swiss-Prot  Length:259

    Alignment length:247
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       
           RNPH_MYCTU     2 SKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPGVLP 248
               SCOP domains d3b4te1 E:1-151 automated matches                                                                                                                      d3b4te2 E:152-247 automated matches                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeee.......eeeeeee..eeeeeeeeee....-------..eeeeeeee..........hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeeee..eeee..hhhhhhhh.eeeeeeee....eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------RIBONUCLEASE_P--------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3b4t E   1 SKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVP-------LGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPGVLP 247
                                    10        20        30        40        |-      | 60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
                                                                           49      57                                                                                                                                                                                              


Chain F from PDB  Type:PROTEIN  Length:240
 aligned with RNPH_MYCTO | P9WGZ6 from UniProtKB/Swiss-Prot  Length:259

    Alignment length:247
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       
           RNPH_MYCTO     2 SKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPGVLP 248
               SCOP domains d3b4tf1 F:1-151 automated matches                                                                                                                      d3b4tf2 F:152-247 automated matches                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeee.......eeeeeee..eeeeeeeeeee...-------..eeeeeeee..........hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeeee..eeee..hhhhhh...eeeeeeee....eeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------RIBONUCLEASE_P--------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3b4t F   1 SKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVP-------LGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPGVLP 247
                                    10        20        30        40        |-      | 60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
                                                                           49      57                                                                                                                                                                                              


Chain F from PDB  Type:PROTEIN  Length:240
 aligned with RNPH_MYCTU | P9WGZ7 from UniProtKB/Swiss-Prot  Length:259

    Alignment length:247
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       
           RNPH_MYCTU     2 SKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPGVLP 248
               SCOP domains d3b4tf1 F:1-151 automated matches                                                                                                                      d3b4tf2 F:152-247 automated matches                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeee.......eeeeeee..eeeeeeeeeee...-------..eeeeeeee..........hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhh............eeeeeeeee..eeee..hhhhhh...eeeeeeee....eeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------RIBONUCLEASE_P--------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3b4t F   1 SKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVP-------LGWLTAEYAMLPSATHSRSDRESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRDALALPYPGVLP 247
                                    10        20        30        40        |-      | 60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
                                                                           49      57
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3B4T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3B4T)

(-) Gene Ontology  (9, 16)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (RNPH_MYCTU | P9WGZ7)
molecular function
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0000049    tRNA binding    Interacting selectively and non-covalently with transfer RNA.
    GO:0009022    tRNA nucleotidyltransferase activity    Catalysis of the reaction: tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate.
    GO:0004549    tRNA-specific ribonuclease activity    Catalysis of the hydrolysis of phosphodiester bonds in tRNA molecules.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0090501    RNA phosphodiester bond hydrolysis    The RNA metabolic process in which the phosphodiester bonds between ribonucleotides are cleaved by hydrolysis.
    GO:0016075    rRNA catabolic process    The chemical reactions and pathways resulting in the breakdown of rRNA, ribosomal RNA, a structural constituent of ribosomes.
    GO:0008033    tRNA processing    The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
cellular component
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain A,B,C,D,E,F   (RNPH_MYCTO | P9WGZ6)
molecular function
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0000049    tRNA binding    Interacting selectively and non-covalently with transfer RNA.
    GO:0009022    tRNA nucleotidyltransferase activity    Catalysis of the reaction: tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate.
    GO:0004549    tRNA-specific ribonuclease activity    Catalysis of the hydrolysis of phosphodiester bonds in tRNA molecules.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0090501    RNA phosphodiester bond hydrolysis    The RNA metabolic process in which the phosphodiester bonds between ribonucleotides are cleaved by hydrolysis.
    GO:0008033    tRNA processing    The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.

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    Gly E:244 - Val E:245   [ RasMol ]  
 

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  3b4t
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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